Pangasianodon hypophthalmus (striped catfish): 113539581
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Entry
113539581 CDS
T05759
Symbol
taf4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113539581 (taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113539581 (taf4)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113539581 (taf4)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113539581 (taf4)
Coactivators
SAGA/TFTC/STAGA complex
113539581 (taf4)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
113539581 (taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
113539581
NCBI-ProteinID:
XP_026791215
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MVTTLPGHEVKLGTSTVQTLDGGDAMDPRSESTPASSGSSSDPAASATVSVTVPVVNNGP
GIAKGLVTAPSTSNTVIQASFVSAPSVNVSSAPGGTASASATIRPSMQAATLTINGNNKA
SCVLTAAPSVATATGSTPLTNAQPPVSVSASPAVSIKAESPQTVIQSAAHTGSPQVSPGA
AKGAGLMHATAAVRGGAPVTGGGATVAAAAAGGVRTIAPQQVLAPRLPQSTPGQPSIHNI
QLPPGMVLVRSEAGQLLMIPQQVLAHMQATRAATPASTTPGQVTSTQTPGAPIMARPVTP
TIIKQGSPTTSSTTAPTLQRPPMQVQSVGSVLAVQPGTAQRMVTPTTGTSVALATETMEN
VKKCKNFLSTLIKLATSAKQSSQTAANVKDLVKNLLEGTIEAEDFTSRLYKELNSSPQPY
LVPFLKRSLPALRKLTPDSLAFIQQSQGLQPTKPAATVVLTNTTTANAATVATATPATSV
PSATPSISAGTAATAASAAAATAPRTLTQPALATTSQPASLVLQSQQQGAIVKSPQVTLA
TPMVTLRGQPHSRIVVGQTQVQVKQINTVSVKPGMVSGAKVSPSPVALNAAQKNKLKDAS
GGTFKDDDDINDVASMAGVNLSEESARILATNSELVGAVTRSCKDEAFLFSAALQRRILD
IGKRFGVTDLGPEVVNLVSHATQQRLQNLLEKVTVIAQQKNMNYKEDARFEQVTDVRAQL
KFFEQLDQLEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQIRQRDA
NLTALAAIGPRKKRKLDSPALGTDAEGSGSSSSSSVGLSGGASRQFTRQRITRVNLRDLL
FCLENERESSRSQLLYRALLK
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggtaactactttgcctggccacgaagtcaagctcgggacgtcaacagtacaaactttg
gacggaggcgatgcgatggatccgcgttcagaaagcacgccagcgtcgagcggctcatcg
agcgatccagccgcttcagctaccgttagcgttaccgtgccggtggtcaacaacgggccc
ggaatagcgaaaggacttgtgactgcaccttctacttcaaacacggtgatccaggcgtct
ttcgtgagcgcgccgagcgtgaacgtgtctagcgcgccaggcggaaccgcctccgcctcc
gccaccatcaggccatctatgcaagccgcgactttaaccattaacgggaataataaggcc
agctgcgtgctgacagctgcgcccagtgtagccacggccacgggaagcacgccgctcaca
aacgcccagcctcctgtcagtgtgagcgcgagtccggcggtgtcaatcaaagccgagtca
ccgcagaccgtgatccagagcgcggcccataccggatctccgcaggtctcccccggggca
gccaaaggcgctgggctgatgcatgcgacggcggcggtgagaggcggagccccggtgaca
ggaggcggggccacggtggcagcagccgcggcggggggcgtgaggaccatcgcgccgcaa
caggtgctcgcgccccgcctcccacagagcaccccgggccagccgagcatccacaacatc
caacttcctccaggtatggtgctggtgcgaagcgaagccggacagttgctaatgatccct
cagcaagtgttggctcatatgcaggccacacgcgctgccactcccgccagcaccacgccc
ggacaggtcacttccacacagacccctggtgctcccatcatggccagaccagtgactccc
accatcatcaagcagggctcacccacaaccagcagcaccactgctcccacactgcagagg
ccacccatgcaggtgcaatcggtgggctctgtgttggcagtgcagccgggcaccgcccag
aggatggtaactcccactactgggaccagtgtcgccttggcaacggaaaccatggagaac
gtgaagaagtgtaagaacttcctgtccacgctgatcaagctggccaccagcgcgaagcag
tcatcgcaaacggctgctaacgtcaaagatctggttaagaacttgctggaagggacaatt
gaagcggaggacttcactagcaggttatacaaggagcttaactcttcaccccagccttat
ctcgtgcctttcctaaagaggagtcttcctgctctgagaaaactcaccccggactccctg
gccttcatccagcagagccaaggcctgcagcccaccaaacctgcagccaccgtggtgctg
accaacactacgacagctaacgctgccactgttgctaccgcaactcctgctacatctgta
ccttctgcaactccttcaatttccgcaggcactgcagcaaccgctgcatctgctgcagct
gccacggccccgcgcacactcacccagcccgctctcgccaccaccagccagcctgcctca
ctggtgttgcagtctcagcagcaaggtgcgatcgtgaagtccccccaggttaccctggct
actcccatggtaacgctcaggggtcagccgcacagccgcatcgtagtggggcaaactcaa
gtgcaggtcaaacagattaacacagtgtctgtgaagcccgggatggtgagtggagcgaag
gtctctcccagccctgtggctcttaacgcagctcagaagaacaagctgaaggatgcctct
ggggggacgttcaaggatgatgacgatatcaacgatgtagcctccatggccggtgtgaat
ctgtcggaggagagcgcacgaatcctggccaccaactcggagttagtgggggccgtgact
cgctcgtgcaaggatgaagcctttctgttctcagccgcattgcagcgcaggatactggac
atcggtaaacggtttggagtgacagacctgggccccgaggtggtaaacttggtgtctcat
gccactcagcagagactgcagaatcttttagagaaagtcacggtcattgcacagcaaaag
aacatgaactataaggaggatgcacggttcgagcaggtgactgatgttcgcgcgcagctc
aaattcttcgaacagctggaccagctggaaaaacagaggaaggaagagcaggagagggaa
attttaatgaaggcagccaagtctcggtctcggcaggaggaccccgagcagttgcggttg
aaacaaaaggccaaagagatgcagcagcaggagctggctcagataagacagagagatgcg
aacctgacagcgctggctgctatcggacccaggaaaaagaggaaacttgactcacctgct
cttggcactgatgcggagggttccgggtcttcatcgagctcgtctgtgggtttgagtggc
ggcgcatcacggcagttcacccgccaacgcatcacgcgtgtaaacctcagggatctgctc
ttctgcctagagaatgagagagaaagcagccgctcacagctgctctaccgggctctgctc
aaatag
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