Pangasianodon hypophthalmus (striped catfish): 113539591
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Entry
113539591 CDS
T05759
Symbol
pbrm1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113539591 (pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113539591 (pbrm1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113539591 (pbrm1)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113539591 (pbrm1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
113539591 (pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
113539591
NCBI-ProteinID:
XP_026791244
LinkDB
All DBs
Position
Unknown
AA seq
1641 aa
AA seq
DB search
MGSKRRRATSPSSSVSGGDFEDSQPAPTSSSSRKRRRTANIPTVDPIAVCHELYNTIRDY
KDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKMEEYDDVEQLTLDFQLLF
NNTKTYYKPETPEYRAACKLWDLYIRTKNEFVQRGDYDEDDDDGDDARETPGGAMEDEAA
ASLKEVLEQLLDTVLRHSEHGRLVSELFQRLPSKIQYPDYYAIIKEPIDLKAIAQRIQIS
YYKSVNHMSKDIDLLVKNAKTYNEPGSQVFKDANTIKKIFSQRKMELEHMEPIKSSIRIR
NRKSVHGDRLSSITMALQYGSESDEDGILTGSVHYDEGESEAESIHSNMDMSNPIFQMYE
AIRGGRNSQGQLIAEPFLQLPSRKDYPDYYQQISQPISLQQIRDKMKNNEYESVEQIDAD
LNVMFENAKRYNVSNSHIYKRALKLQHILQLKRKELGRREDEDGDSMLSSTLSDGSTTKR
KSYKKNTKKNRLKSLYQAVTEARELGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLRTI
DHKIRADRYANEDAMVEDMKLMFRNARHYNEEGSQVYNDANTLEKIMREKKRELGPAPED
DDIISPKLKIRKSGISPKKSKYLTPLQQKLNELYEAVKNYTDKRGRRLSTIFLRLPSRAE
LPDYYLAIKRPIDMERVKSHMLANKYQDVDALVEDLVLMFNNACTYNEPESLIYKDALVL
HKVLLETRRDLEGGDDSNVPDVPRLIQDLIRSLFVSVLGHQDDEGRCYSDSLAEVSAEDP
ANPDKPRLNFEIIRANVEKGRYKRLDVFQDHMFEVLEKARRMHRTDSEIFEDAVELQHFF
IRIRDELCKNGEILLTPALSYTSKHLHSDVEKEKKEKLPKEFEEDKLKREEEKKEAEKSE
ESSAGTWQGGLQRTYSQDCSFRDRMYHVGDYVYVEPAEANLQPHIVCIERLWQDDTGEKW
LYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKIPVNKILGKCVVMFVKEYFKLSPEGFR
PEDVFVCESRYSAKTKSFKKIKMWTMPLSSVKFVPRDVPLPVVRVASMFAPKPESEKAAE
PTEDNKIAASVIDKEREDVPVEMSNGEPGCQYYDQLCYNAMWLKVGDCVYIRSHGLVRHR
VGRIEKMWVRDGAAYFFGPIFIYPEETEHEPTKMFYKKEVFLSNLEESCPMTCITGKCAV
SSFKDYLSCRPTEVPEDDVLLCESRYIESEKQMKKFKGLKRFSLSAKVVEDEIYYFRKLI
VPQKEPSPLLDKKIEELEAKFADMTDEELEDLGDDDGDGLDGQGMSQLQTQLHSDLEMLS
YTPIQSTPKSFKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQHPDFSFGELSRLVGTEW
RNLESAKKAEYEERAAKVAEQQERERAAQQQNSPRAGTPVGALMGVVPPPSPMGMLNHSM
TPMAGMVGSFLRPPMLPLPGPVDGIVSMAGIPPHFLPVLHRHLPPGMYGFPGMPYPGMNG
MGPGSAGNPYGAQTGMIGANQQAPPPYPGQGQVGQPSLQQPSTPIFVAPPPKPQRLLHSE
AYLRYIEGLNAESSTVSKWDQTLSARRKDVRLTKEQESRLPSHWLKSKGAHTTMADALWR
LRDLMLRDTLNIRQTYNIQNI
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgggctctaagcggaggagggccacctccccgtccagcagcgtgagcggtggagacttt
gaagacagccagccggcgccgacctcctcgtcaagccgcaagagaagaagaacagcaaac
attcctacggttgatcctattgcagtgtgtcatgaactttacaacacaatcagagactat
aaggatgaccagggcaggatgctgtgtgaactcttcatcagagcgccaaagaggaggaac
cagcctgattactacgatgtagtgtcgcagcctatcgacatgatgaagatccagcagaag
ctgaaaatggaggagtacgacgatgtggagcagctcacactcgatttccagctcctcttt
aacaacactaagacctactacaaacctgaaaccccagaataccgagctgcgtgtaagtta
tgggacctttacattcgcaccaagaacgagtttgtgcagcgaggagactatgacgaagat
gatgatgacggtgatgatgcgcgagaaactccaggaggcgccatggaggacgaggctgca
gctagtcttaaggaggttttggagcagctgctcgacacggtgttgagacacagcgaacac
ggacgactcgtcagcgaactcttccagagacttccttctaaaatacaatatccggattat
tacgctattatcaaagagccaatagatctcaaggccattgcacaaaggatacagatcagt
tactacaaaagcgtgaatcatatgtccaaagacattgacctgctagtcaaaaatgctaaa
acatacaatgagcctggttcacaagtgttcaaggatgcaaacacgatcaaaaagatcttt
tcccagaggaagatggagctcgagcacatggagcctataaaaagcagcatccgtatcagg
aacagaaaatctgtgcatggagacagactctcctcaattacgatggctttacagtacggc
tcagagagtgatgaagacggcatcctcacaggctcggtgcattatgacgagggagaatca
gaggctgagagcatccactccaacatggacatgtccaatcccatcttccagatgtacgag
gctatacgaggaggcaggaacagtcaagggcagctcattgctgaaccttttcttcagctg
ccgtccaggaaggactacccggactactaccagcagattagccagcccatctccctccag
cagattcgtgataagatgaagaataacgaatacgagagtgtggagcagatagacgctgat
ctaaatgtgatgtttgaaaacgcaaagcgatacaatgtctccaactcccacatctacaaa
cgggctctgaagctgcagcacattcttcagctgaaaaggaaagagctaggaaggagagaa
gatgaggacggtgacagtatgctgtcctccactctgtcagatggcagcaccaccaaacgt
aagagttataaaaagaacacgaagaagaaccggttgaagtctctttaccaggccgtgaca
gaggctcgagagctgggcaccggtcgtagactctgtgacttattcatggttaaaccttct
aagaaagactatccagactactataagatcatactcgagcccatggacctgcgcactata
gaccacaagatccgcgcagacagatacgccaacgaggatgccatggtggaggacatgaag
ctgatgttccgcaatgcgagacactacaatgaagagggctcacaggtgtataatgacgct
aacactctggaaaagattatgagggagaaaaagcgagaactcggccctgcgccagaagac
gatgacatcatctcaccaaaactcaaaataagaaaaagtggcatctccccaaagaagtcc
aaatacctgacgcctctgcagcaaaagcttaatgagctctacgaggcggtgaaaaactac
acagacaagcgaggccgtcgcctcagcaccatcttcctgcgcctgccgtcccgagctgaa
ctgccggactactacctggccatcaagaggcctatagacatggagcgggtcaaaagccac
atgctggccaacaagtaccaggacgtggacgctctagtggaagaccttgtgctgatgttt
aacaatgcgtgtacctataacgagcctgagtcactcatctacaaagatgctctggtgctt
cacaaggtccttctggagaccaggagggacttggaaggaggcgacgactccaacgttcca
gacgtacctcgcctcatccaggacttgattcgcagcctcttcgtttcagttctgggtcac
caggatgatgaaggtcgttgctatagtgactcgctggccgaggtctcggccgaggacccg
gccaatcctgacaagcctcggttgaacttcgagatcatacgggctaatgtggagaaaggg
cgctataagaggttggacgtcttccaggatcacatgtttgaagtgctagagaaggccagg
agaatgcataggacggactctgagatctttgaggatgcggtagagctgcagcacttcttc
atccggatcagagatgaactgtgtaagaacggagagatcctgctcaccccggcactcagc
tacacctccaaacacctgcacagtgatgtggagaaggagaagaaagagaagctgcccaaa
gagtttgaggaagacaagctcaaaagggaggaggagaaaaaagaagcggagaaaagtgag
gaatcatctgccgggacttggcagggaggcctccagcgcacatacagtcaggactgcagt
tttcgtgacagaatgtatcacgtaggggactatgtctacgtagagcctgctgaggcgaac
ctccagcctcacatcgtctgtatagagcgcctctggcaggacgacacaggagagaaatgg
ctatatggctgctggttttacaggcccaatgagactttccatcttgccacacgcaaattt
ctggagaaggaagtctttaaaagtgactactacaacaaaattcctgttaacaaaattctg
ggcaaatgtgttgtcatgtttgttaaggaatacttcaagctcagccccgagggctttaga
ccagaggacgtgtttgtctgtgagtcccgttactcggccaaaaccaagtcgttcaaaaag
atcaagatgtggaccatgcctctgagctcggtcaagtttgtccctcgtgacgtgcctttg
ccggtggtccgagtggcctctatgtttgctccaaaaccagaaagcgagaaagctgccgag
ccgacagaggacaacaaaattgcagcctcggttatcgataaggagagggaggacgttccc
gtggagatgagtaacggtgagccgggctgtcagtattacgatcagctctgctacaatgcc
atgtggctcaaagtgggagactgcgtctacatccgctctcacggcctagtgcgccaccgt
gtgggcaggattgagaaaatgtgggtgcgggatggggccgcctactttttcgggcccatc
ttcatctatcctgaggagactgaacacgagcccaccaagatgttctataaaaaggaggtg
tttctaagcaatctggaggagtcctgccctatgacctgcattactgggaagtgcgcagtg
tcctcatttaaagattacctgtcgtgccgtccgaccgaagtgcctgaagatgacgtgttg
ctgtgtgagagccgctacattgagagcgagaagcagatgaagaagtttaaagggctgaag
cgattctccctctctgccaaagtagtggaggatgaaatctattattttaggaagctgatc
gtgcctcagaaggaaccgtctccactgctggacaagaagatcgaggagctggaggccaag
tttgctgacatgacagacgaagagctggaagacctgggtgatgacgatggggacggcttg
gacggccagggaatgtctcagctccagacgcagctacacagcgatctggaaatgttgtca
tacacaccgatacagtccacaccaaaatcctttaagggcttgtcgaagaaggaaggcgcg
aagaggaagatcaacatgagcggctacatcctgttcagcagcgagatgcgggcggtgatc
aaggcccagcacccggacttctctttcggcgagctcagccgtctcgtgggcaccgagtgg
agaaatctggagtcggccaagaaagctgagtatgaagagagggcagccaaagtggcggag
cagcaggagcgcgagagggcagctcagcagcagaactccccgagagcaggtaccccagta
ggggcgctcatgggggtggtgccccctccgagccctatggggatgcttaaccacagcatg
acgcctatggcaggcatggtgggtagctttcttcggccacccatgctgccgctgccaggt
ccagttgatggcattgttagcatggctggcataccgccgcatttcctgcctgtcttacac
cgccatctcccaccgggcatgtatggcttccctggcatgccgtacccgggtatgaatgga
atgggccctggatctgcaggaaacccctatggagcccagacaggcatgattggtgccaat
caacaggccccgcccccttacccaggacaaggccaggtaggccagccctcccttcaacag
ccctccaccccgatattcgtggctcctcctccaaaaccacagcgactcctccactctgag
gcctacctgaggtacatagaggggctcaatgcagagtcgtctactgtcagcaaatgggac
cagacgttgtcagctcgaaggaaagacgtacgcctcacgaaagaacaggagagcagactt
ccgtctcactggctgaagagcaaaggggcgcacaccaccatggccgacgccctgtggcgc
ctgagagacctcatgttaagagacacactaaacatcagacaaacatacaacatccaaaac
atctaa
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integrated database retrieval system
