Pangasianodon hypophthalmus (striped catfish): 113539627
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Entry
113539627 CDS
T05759
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
113539627
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113539627
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Major cadherins
113539627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
CADH_Y-type_LIR
Cytomega_TRL10
DUF4690
Motif
Other DBs
NCBI-GeneID:
113539627
NCBI-ProteinID:
XP_026791339
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MQVGFVLPLACALVLKSSLDTAGSLTVDQCRLGFSQNFYTVFIPREQLQGHTIVKGTVLS
SGQVNFEACHVNERISFESSDPKFSIHPDGSLYTEQDVMNLSEPIQFVVTAQGSKDTQIW
KTIVKLVIPRHPRPPLVNQIVDKADSRHNPYHNLSQQQRGFSTSGLRWQTRAWLTPPISA
PENSRRAFPLFLARGSAGVPTVDPCRPGFSQNFYTVFIPREQLQGQSIVKGTLLSSARVK
FEACHLNERISFESSDPKFSVRPDGSLYAEQDVMNLSEPIQFMVTAQGSKDTQIWETTVK
LAIAGHPLPPLINQIGEETGYHSRSHHNHYSNPRVIMFPRRHQRGSSTNGLRRQKRDWVI
PPINVPENSRGPFPQMLVRIRSDQDKEIEIRYSITGAGADQPPSDVYIIDPITGKMSVTK
PLDREDRASYHLRAHAVDVNGNQMEPPIDLYIYVIDMNDNRPEFQNQVYNGSVPEVSKPG
TSVMRVTAIDADDSTMPNGLVHYRILNQSPHIPIPNMFTINGATGEISTIAAGLDREKVS
QYTLIVQATDMEGSLNFGLSNTATALITVTDINDNPPELDAKTFLGEVPENAVGVVVANL
TVRDRDQPHTPNWNAVYRIVGGDSMGHFTIRTDELTNDGRVTVVKPVDYERNGAFMLTVV
VSNQAHLASGIPSSLSSTAGVTISVLDVNEAPVFPSNPKIIRFEEGVPADTTLTIFAAQD
PDRFIQQTVRYSKLSDPGNWLRINRTNGQITTTAILDRESPYVKNNVYEASFLAVDNGSP
PATGTGTLQIYLIDVNDNVPVLVPREAQLCERSRPNSRINITASDADTEPNAGPYVFELP
SFPPSVRRNWTISRLNGEYAQLRLRIPYLEAGVYRVPILVSDSGNPPLTNRSIIRVKVCP
CDDHGDCTSLGAVASASLGTGAIIAILICIIILLSMVLFFVVWMKRREKERQTKPLLIDP
EDDVRDNILKYDEEGGGEEDQDYDLSQLQQPETLEHIMTKPGGVRRVDERPVIPETQYPI
RPSIPHPEDIGEFITDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLDSSSSEEQD
YDYLNDWGPRFKKLADLYGGGDD
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcggcttcgttcttcctctggcgtgcgctttagtcctgaaaagctcactggac
actgctggaagtctgactgtggatcaatgtagactcggattctcccagaacttctacact
gtgtttatcccacgggagcagctgcagggtcacaccattgtcaaaggcaccgtgttgtca
tcaggtcaagtaaacttcgaggcttgtcatgtgaatgagcggatcagcttcgagagcagt
gacccgaaattcagcatccatccggacggctctctgtacacagagcaagatgtgatgaac
ctgtccgagcctatacagttcgtggtgactgctcagggaagcaaagacacgcagatctgg
aagacgattgttaaactggtcatccccagacacccacgtcctcccctcgtaaaccagatt
gttgacaaggctgattcccgtcacaacccctaccacaatctcagtcaacaacagcgagga
ttttccaccagtgggctgcgctggcaaacgcgagcctggctcactccacccatcagtgca
cctgaaaactccaggagagcctttccactatttcttgccagggggagtgctggagttccg
acggtggatccatgcagacccggattctcccagaacttctacaccgtctttatcccacgg
gagcagctgcagggccagagcattgtcaaaggtactctgctgtcgtctgctcgagtgaag
ttcgaggcttgtcatctgaatgagaggatcagcttcgagagtagtgaccccaaattcagc
gttcgtccagatggatctctgtatgcagagcaagatgtgatgaacctgtctgagcctata
cagttcatggtgacggctcaggggagcaaagacacacagatttgggagacaactgttaaa
ctggccatcgccggacacccacttcctcccctcataaaccagattggtgaagaaactggt
taccactcaagatcccaccacaatcactactccaatcccagagtcatcatgttcccacgt
cgacaccagcgaggctcctccaccaatgggctgcgccgtcagaagagagactgggtcatt
cctcccatcaacgtgcctgaaaactctagaggaccctttccacaaatgctcgtcaggatt
cgatcggaccaggataaagagattgaaatccggtacagcataacaggagcaggtgctgat
cagccacccagtgatgtctacatcattgaccccatcaccggaaaaatgtctgtcaccaag
ccgctggacagagaagaccgagcctcctaccatctgagagctcatgcagtggacgtcaac
ggaaatcagatggaaccgcctattgacttgtacatttacgtcatcgatatgaacgacaac
agacccgagtttcagaaccaggtctataatggatctgttcccgaggtctctaaaccaggc
acgtcagtgatgcgcgttacggcgatcgacgctgacgacagcacgatgcccaacggccta
gtgcactacaggatcctgaaccagagtccacacatccccattcccaacatgtttaccatc
aacggagctacgggcgagatcagcaccatcgcagcaggcctggacagagagaaagtgtct
cagtacacgctgatcgtgcaggccacagacatggagggcagcctgaacttcggcctctcc
aacacggcaacggctctcatcactgtcaccgacatcaacgacaaccctccagagcttgac
gccaaaacgttcctgggcgaggtgccagagaatgcagtgggtgtagtcgtggccaatctg
accgtgcgagacagagaccagcctcacacacccaactggaatgcagtttacaggatagtg
ggtggagactccatgggccacttcaccatccgcactgacgagctcaccaatgacggcaga
gtcacagtggtcaagccagtggactatgagaggaatggcgccttcatgttgactgtggtg
gtatctaatcaggcccatctggccagtggcatcccatcatctctctcgtccacggctggc
gtcaccatctctgtactggatgtgaatgaggctccagtctttccctccaaccccaaaata
atccgctttgaggagggagttcctgccgacaccacactcaccatattcgctgctcaagat
ccagaccgctttattcaacagactgtcaggtactctaagctgtccgatcctggaaactgg
ctcagaatcaacaggacaaatggccagatcacgacgacagccatattggaccgggaatcg
ccttacgtgaaaaataacgtgtatgaagcgagttttctggctgtagataatggatctcct
cctgccacaggaacaggcactctgcagatctatctgatagatgtaaatgataatgtacca
gtgctggtgcccagagaggcccagctgtgcgagaggtcacgacccaactccaggatcaac
atcacggcttcggatgctgataccgagcccaatgccgggccatacgtcttcgagctgccc
tcgttccctccctctgttcgccgcaattggaccatctcacgtctgaatggtgaatatgct
cagctcaggctgaggatcccatacctggaggcaggtgtgtatcgtgtgcccatcctggtc
tcagactcgggcaaccctcccctaactaaccgctccatcatcagggtgaaggtgtgtccc
tgtgatgaccatggagattgtacttcacttggagcagtggcatctgcaagcctgggcacg
ggcgccatcatcgccatcctcatctgtatcataatcctgctcagcatggtgctgtttttt
gtggtgtggatgaagcgcagagagaaggagcgacagaccaagcctcttctcattgacccg
gaggatgatgttagggacaacatattgaaatatgatgaggagggagggggagaggaggat
caggactatgacctgagccagctgcaacagcctgagactcttgagcacatcatgaccaag
ccagggggagtgaggagagtagacgagaggccagtcatcccagagacccagtacccaata
agacccagcataccgcatcccgaagacatcggagaatttatcactgatgggctgcgagca
gcagataatgacccgacggctccaccatacgactctctgctcgtgtttgattatgagggc
agcggctcaacagccggctcagtcagctcgctcgactcgtccagttcagaagagcaagac
tacgactacctcaacgactgggggccgcgctttaaaaaactggccgacctctatggcggt
ggggacgactga
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integrated database retrieval system
