Pangasianodon hypophthalmus (striped catfish): 113539794
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Entry
113539794 CDS
T05759
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113539794 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
phyp04091
]
113539794 (frem1)
Lectins [BR:
phyp04091
]
C-Type lectins
Lecticans
113539794 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Chordopox_A33R
Motif
Other DBs
NCBI-GeneID:
113539794
NCBI-ProteinID:
XP_026791647
LinkDB
All DBs
Position
Unknown
AA seq
2182 aa
AA seq
DB search
MVFQKRTHMWPFWFLLLLGLLHFGICSLVKTNHGLRVKRGQSAFLQEGDLQFHIPREKDA
CKLEVVLNEPITQRVGTLSPQVFDCHYLADEVKYTHNGCPILKEDIVKLRLYRFTETETY
SELFSLHIEIMEPDCNIIKLGPQTLQVPEFYGLSNMLDGNVMSFHYDHRPNIECTIRVMT
PESGLPGHGQLVTGEPDKLEGPRGDEPDSFVSIRQQLENKARAKCKSEDCLKGLKLVTIT
KVSCEEFLMMGIRYQHIDPPSPDIDYIAIKLDLTDTRSGSIIQSEQAWIPITIKGAVTNQ
PPKPAFMSMFILEVDQFILTPLSTAILDAEDAETPKNRLVFNITKPPSEGFITHLSDHTK
PISSFTWVDLNEMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSSPIMVHVSVRTADTNA
PRVSWNMGLSLLEGQSRPITWDQLQIVDNDDLKAVRIITVDGLQHGRLTVRGGKGFMFTV
SDIKAGVVRYYHDDSDTTKDFVVFRITDGRHQTRHKFPINILPKDDSPPFLITNMVLELS
EGQTALLRGSILQASDMDSSDDYILFNVTKPPQAGEIMKLPGPGITGYPVMRFLQKDLFH
SIIYYRHFGNEVFDDSFEVVLSDFHDPPNLSEPQIIVIQIQPIPDQPPKEAPGVTRHLIV
KETDVVYLTKQQLHFVDVESPDSELTYTVTTPPFYTTTYGGTDAGRLFLVDSIPKLAKDP
NAPVLRLFTQHAVNYMKVAYMPPFQDIGPYPQHIQLVLSVASEQGRTTTGICFNITVLPV
DNQSPEVHMNQLIVDEGGECWVSADHLHLTDVDSLEDSLRVALKRRPQHGDVYLDGAPLS
QGQTFTVRDLKSLKVRYHHDSSETEEDNIECIATDGVNSVDFVLHIKVTLVNDEMPALVP
GLKTVLECAEGQEVVITIEYIYATDGDSDDSKLTYLIARQPYHGVVLKNGIVVDRFFQED
IETRIISYKHTGLEVGLLPRHDTITFVISDEQTDPVPSCCFDRPSQFNGRTKHPQDSLLI
YDLNITVYPVDNQPPSIVIGEVLQVDEGGSASITVAHIGASDQDTPLEDLQLVLVTTPQF
GYIENILPSPGFEKSNMGISIASFSYRDVLNGHINYVQSRHQRTEPTADQFMLYISDDKH
QSSAIPFYIIIKPTNDESPDFLARNISVREGDMKELDASIINAVDLDVPRDKLTFRIIQQ
PQHGAIMGGLHGNDVAHYRRSIQNHGTEVQVQVFTMEDLRNGMTLMYLHDDSESEQDSFI
IQLSDGKHQLQRHISVKVTPINDEKPCIIRNTGIEVEPGEARLISSAVLSAYDKDTPSTD
IIYVFESVPVHGLLQIKAGLDWRTLSTGMNCSQEAVDMNLLRYVHTAQPGAHTQDFFIFH
LQDGRNRSPAQHFHISLKELEKGDIALFVKPVKASRGEHVVITTDMLLAVDGTEKPEELL
YVITVPPAHGHMEYIKHTGIPIHSFSQLDIVANLVCYVHDNRATSPRETVQFVISNGKST
RNGTLEILVEMTDRVLPMLVQKTGLQVPQGSTVTITTDNLHLSDPDTPPHSLIFMLVQPP
QYGQLIVKGFPLAPGSNFTQQNLQDLDVAYRHSGGASQIDRFTFTAADSTTRGFLVGGKV
QTEPVFFSIQIETLDRSAPSVMVLETLWKVELLKDGRYGIFISSRELKAQDLNGADESLI
FHILRAPYFGYLENVTNGAFVRQRFTQRDLNKKNILYIINPSLEALNDSLEFAVSDPLGN
TGPSHKLEFSWASVELTKTEYCVCEGKGPLSLTVQRKGNMQDSSYVTLKVKELTAAIGKD
FISAPSTLIQFDPGVASRQWKVELVQDFLEEAEEMFEVTLDSPVGAIQRGNNKAVITIMD
NKNGLCADPRGPDLQGKELQAGPYPKHGSIQVETLPITLGVGPEIARGDNLPQVITPVSK
KRLRTNGNGKSIRPSSIIRSGSDVLYTYHGIMSLTVEDETTAFNSGKKAQVQVTSRGQQR
SLPAKSPTHLTALPTNNRRGTAPQNSFSRPESKACTPELAGFLHFNASLGQLLQCNGISW
KPWAATDEAVNAQKCPQGWTYHSHHCYLLSTERKATWNDAARACRESFQGSLVSVLSKAD
MDWLWDYSERKPFWIGLNDRASKGRWEWVDGEPVTYTNWRRGPPRTRIKSNKKCVLVWRK
TKWQIRDCKTGKGHRFVCYVKT
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atggtttttcaaaaaaggactcatatgtggccgttttggtttctccttttgctgggactt
ttgcactttggcatttgctcccttgtgaagaccaaccatggcctgcgggtgaagagaggc
cagtcagctttcttgcaggaaggagatctgcaattccacatacccagagagaaggatgcc
tgcaagctggaagtggttctgaatgaacctataacccaacgtgttggcacactgtcccct
caggtttttgactgccactatttggctgatgaggtgaaatatactcataatggctgtcct
attttaaaagaagatattgtcaaacttcgattgtacagattcacagagacagagacatat
agtgaactgttctcactccatattgagatcatggaacctgattgtaatattataaagttg
ggaccacagacattgcaagttccagagttctatggtctttccaatatgcttgatggtaat
gtgatgtccttccactatgatcatcgacccaacatagagtgtactattagggtgatgaca
ccagaatctggtctacctggacatggtcagctggtcactggtgaacctgacaagctagaa
gggccaagaggagatgaaccagacagctttgtctcaattcgacaacaattagaaaacaaa
gccagagccaaatgcaagagtgaagactgtttgaaaggactaaaattggtgacgattaca
aaagtgtcttgcgaagaattcttaatgatgggcattcgctatcagcatattgatcctcca
tcacctgatattgattacattgctatcaaactggacctcacagacacaaggagtgggagc
ataatccagtcagagcaagcctggatccccattaccattaaaggtgctgtaaccaaccag
cccccaaagcctgccttcatgtccatgttcatcctggaagtggatcagttcatcttgact
ccactgtccacagccatccttgatgcagaagatgctgagaccccaaagaacaggctggtg
ttcaatatcaccaagcctcccagtgagggctttatcactcatttgtctgatcacaccaag
cccatatcatccttcacctgggtggacctcaatgaaatgcttatcagctaccagcctccc
aattctagccatacacaacgcaggaactatgaggtagagtttgaagtccacgatttctac
tttgagaaaagttcacctattatggtacatgtgtcagtcaggacagcagacacaaatgca
ccaagagtgtcatggaacatgggtctcagtctcctagaaggtcagtctcggcccatcacg
tgggatcagctgcaaattgtggacaacgatgatctaaaggctgtaagaatcatcaccgtg
gatggcttacagcatggaagactgactgtcagaggtggaaaagggttcatgttcactgta
agtgacattaaggctggagtggtgcgctattaccatgatgacagcgataccaccaaagac
tttgtggtctttcggatcactgatggccgccaccagaccagacacaagttccccatcaac
atcttacccaaggatgacagtccaccattcctcatcaccaatatggtcctggaactctct
gagggacaaacggctcttcttcgaggttctatacttcaagcgtcagatatggactccagt
gatgactacatcttgttcaacgtcactaagcctcctcaagcaggggagatcatgaagttg
ccaggtccaggaattacaggttatcctgtgatgcgttttctacaaaaggatctctttcat
tccatcatctactacaggcactttggcaatgaagtatttgatgactcttttgaagtggtg
ttatctgactttcatgatcctcccaatctctcagagcctcagatcattgtgattcaaatt
caacctatcccagatcagccacctaaagaggccccaggagtaactcgacatctgatagtc
aaagagacagatgtggtatatttaaccaagcagcagttgcactttgttgatgtggagtca
ccagacagtgagcttacctacacggttaccaccccacctttctacactaccacttacggg
ggaactgatgcagggcggttgttcctggttgacagcatcccaaaattggctaaggatccc
aatgcccccgtgcttagacttttcacacagcatgctgtcaactacatgaaagtggcttat
atgcctcctttccaagacattgggccttatcctcagcatattcagcttgtgctgtctgtg
gcaagtgagcagggccgaactaccactggaatctgtttcaacattacagtgctgccagta
gacaaccagtccccggaggtgcacatgaaccagttgattgtggatgaggggggagaatgc
tgggtcagtgcagatcacttgcacctgactgatgtggattctctggaggactcgctacgt
gtggcactgaagagaaggcctcagcatggggacgtgtatctggatggtgcacccttgagt
caaggccagaccttcaccgttagagacctgaaaagccttaaagttagataccaccatgat
agttcagagacagaggaagataacattgaatgtatagccacagatggggtgaattcagtt
gactttgttctacatattaaggtaacactagtcaatgatgaaatgccagcactggtacca
ggcttgaagactgttctagagtgtgcagagggacaggaagttgtgatcaccatagagtac
atctatgcaacagatggtgatagtgatgacagcaaactgacctatctgattgctcgccag
ccgtatcatggtgtagtgctaaagaatggtatagtggtagacaggttctttcaagaagat
atagaaaccaggatcatcagctacaaacatacaggcctggaggttggattgctccctcgt
catgacaccatcacatttgtgatctctgatgaacagacggatccagttccttcatgctgc
tttgacagaccttctcagtttaatgggcgaacaaaacatccccaggactccttgctaatc
tatgacctcaatattactgtttatcctgtggacaaccagccaccatccattgttattggt
gaagtgcttcaggtggatgagggaggctctgcttctatcactgtagcacatataggagcc
tctgaccaggacactcctctggaggacttgcagcttgtgttggtgactacaccacagttt
ggctatattgagaacattctgcctagtccagggtttgagaagagcaacatgggaatcagt
attgcctctttttcctatagggatgtactgaatggacacataaactatgtgcagtccaga
caccaaaggactgaacccactgctgaccaatttatgctatacatctctgatgacaaacac
caatcctctgcaatccccttctacatcatcatcaagccaacaaatgacgaaagcccagat
ttcctagccagaaacattagtgtccgagagggagacatgaaggagttggatgcctccatt
attaatgctgtggatttagatgttcccagagataagttaacatttcgcatcatccagcag
ccccaacatggggctatcatgggcgggcttcatggtaatgatgtagctcattatagaaga
tctatccagaatcatggaacagaggttcaggtccaagtcttcaccatggaagatctcaga
aatggtatgacactgatgtatttacatgatgactcagagagtgagcaggacagcttcatc
atccagctgtctgatggaaagcaccagctccagaggcacatatcggtcaaagtgacgcct
atcaatgatgagaagccgtgtatcattaggaacactgggattgaggtggaaccaggagaa
gccagacttatttccagtgctgtcctaagtgcttatgacaaagacactccctccactgac
atcatctatgtgtttgagagtgttcccgttcatggcctgcttcagattaaggcaggcctg
gactggaggacactgtcaacaggaatgaactgttcccaggaagctgtggatatgaacttg
ctgcgctatgtacacacagctcagcctggagctcacacacaagactttttcatctttcat
ctacaggacggcaggaatcgctcccctgcacaacacttccacatttcactcaaggagcta
gagaaaggagacatagcgttgtttgtaaagccggtgaaagctagccgtggagagcatgta
gtgatcactacagacatgttgcttgctgtagatggcactgaaaagccagaagagctgctc
tatgtgatcactgtgcctccagcacatggtcatatggagtacatcaaacacactggcatt
cccatacactccttcagccagctggacatagtggctaatctggtgtgctacgtccatgac
aacagggctacttcacctagagagacagtgcagtttgtcatcagtaatggaaaatccaca
cgtaatggtactctggagattctggtggagatgaccgatagagttctccctatgctagtg
cagaagactggtctgcaggttcctcagggttccaccgttactatcaccactgataacctg
cacctgtctgacccagataccccaccccattccctgatcttcatgctggtgcagccccca
cagtatggtcagcttattgtgaaaggttttcccttagctccagggagcaacttcacacag
cagaacctacaggacctggatgttgcttacagacactcaggtggagcttctcagattgac
cgctttactttcactgctgctgatagcacgacaagaggcttcctggtgggagggaaggtg
cagacagagccagtcttcttttctatacagattgaaacattagaccggtctgctccaagc
gtgatggtgcttgagactctgtggaaagtggagcttctaaaagatggacgttatggaatc
tttatctcatccagagaattaaaggctcaggatttgaatggtgcagatgagagcctcatc
ttccacatactcagagccccttactttggatacttggagaatgtcaccaatggtgcattt
gtgcgtcagaggttcactcaaagggatttgaacaagaagaatattttgtatataattaac
ccttccctggaagccttaaatgacagtctggagtttgcagtctctgacccactgggcaac
actggaccatctcacaaattagagttcagctgggccagtgtagagctgaccaagacagag
tattgtgtgtgtgaaggcaaaggaccactctctctcactgttcagaggaaaggcaatatg
caagattcatcatatgtaactctcaaggtaaaggagctaacagcagctataggaaaggat
ttcatatcagctccctcaactctgattcagtttgatcctggtgtggccagtcggcagtgg
aaggtggagcttgtgcaggattttctggaggaggctgaagagatgtttgaggtgacactg
gattctcctgtaggtgcaatacagagaggaaacaacaaagctgtcattacaataatggac
aacaagaatggactgtgtgctgaccccagagggccagatcttcagggtaaggagctccaa
gcagggccctaccccaaacatggctccatccaggtagagactttacctatcaccctggga
gttgggccagagattgccagaggcgataacttgcctcaagttattactcccgtctccaag
aaaagactaagaaccaatggcaatggaaagtctattcgaccctcttcaatcattcggagt
ggatctgatgttctttacacttatcatgggataatgtcactgacggtggaggacgaaact
acggcctttaactctgggaagaaggctcaagtgcaggtaaccagtagagggcagcagcgt
tccctcccagccaaaagcccaacccaccttacagcacttcctacaaataaccgaagaggg
acagctcctcagaatagtttctctaggcctgagtctaaggcctgcactccagagctggca
ggttttctccattttaacgcaagcttaggccagctcctgcagtgcaatgggatatcctgg
aaaccctgggctgctacagatgaggctgtgaatgcacagaagtgtccacaggggtggact
taccatagccaccactgctatctgctgagcacagagcgaaaagctacatggaacgatgct
gccagggcctgtcgagagagcttccaaggcagccttgtcagtgtgctatcaaaagcagac
atggattggctctgggactacagtgagaggaagcccttctggattggtctgaatgaccgg
gcgagtaaaggccggtgggaatgggtggatggagagccggttacttacaccaactggagg
cgcggtccaccccgaactagaatcaagagcaacaagaagtgtgttttggtatggaggaag
acaaaatggcaaatccgagactgtaagactggaaagggacaccgttttgtgtgctatgtg
aaaacatga
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integrated database retrieval system
