Pangasianodon hypophthalmus (striped catfish): 113540001
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Entry
113540001 CDS
T05759
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113540001 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113540001 (dhx15)
03009 Ribosome biogenesis [BR:
phyp03009
]
113540001 (dhx15)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113540001 (dhx15)
Spliceosome [BR:
phyp03041
]
Complex A
U2 snRNP components
U2 related factors
113540001 (dhx15)
Complex B
113540001 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113540001 (dhx15)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
90S particles
Helicases
113540001 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
AAA_29
Atrophin-1
AAA_25
AAA_7
Motif
Other DBs
NCBI-GeneID:
113540001
NCBI-ProteinID:
XP_026791967
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDERSKDRDRDRDRDRDRDRERDRDRERDRD
SKAPNSALNVSAASGGGMLPLKQTAIHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKER
FHEILTRNQSFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRV
ADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHER
TLATDILMGVLKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTP
EPERDYLEAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKI
IPLYSTLPPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQK
VYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRS
NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEF
PLDPQLAKMVIASCEYNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHL
TLLNVYHAFKQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDY
YINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKN
YIRTCTDIKPEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLQTKEYTQY
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgacatcgtttggatttaggagatgattattcttcgagcaaaaagagatca
tcagacggaaaagaccgtgacagagatcgagatgaaaggtcaaaggaccgagaccgggat
cgtgacagagatcgggacagagacagggagagagacagagacagggagcgagacagggac
agcaaagctcccaactcggccctgaatgtgagcgcagcgtctggaggagggatgcttcct
ctgaaacagacagccattcatcagcagatcaaccccttcaccaacctaccccacacgcca
cgctactacgagatcctcaagaaacggctgcagcttcctgtctgggagtacaaagagcgc
ttccatgagatccttacacgcaatcaaagctttgtgctggtgggagagaccggctccggc
aagaccacacagatccctcagtggtgtgtggatatggtgcgctccctgccggggccgaag
cgtggagtagcctgtacccagccccgcagagtggcagccatgagtgtggcacagcgagtg
gcagatgagatggatgtcatgctgggacaggaagttggctactctatcagattcgaggac
tgcagctcggcaaaaactatcctcaagtacatgactgacggtatgctactccgagaggcc
atgaatgacccactgctcgagcgatacggcgtaatcattctggacgaagctcatgagcgc
actctggccacggatattctgatgggtgttctcaaagaagtcgttcgccagagagcagac
ctaaaggttattgtcatgagcgccaccttggatgccggaaagttccaggtgtacttcgac
agctgccccttgctcaccatccccggcagaacgcatcctgtcgagatcttctacacacca
gagcccgagcgtgactacctggaggcagccatcaggacagtcatccagatccatatgtgt
gaggaggacgagggagacgtgctacttttcctcactggacaggaggaaatcgatgaagcc
tgcaagcggatcaaacgggaaatcgacgatctgggccccgaagtgggcgacatcaaaatc
atccccctctactccacactaccaccacagcagcagcagaggatcttcgagcctccgccc
cctcgcaagcctaacggagccattggtagaaaggttgtggtgtcgacaaacatcgctgag
acgtcgctgaccatagacggtgtggtgtttgtaatcgatcctggcttcgccaagcaaaag
gtgtataacccacgcatcagggtggagtcactgctagtgactgcgatcagtaaagcatca
gctcagcagagggcaggaagagctgggcgtacgcgaccgggtaaatgtttccgcctttac
acagaaaaggcgtacaagactgagatgcaggataacacgtacccagagattctcagatca
aacctcggctctgtagtgttacagctgaagaagctgggtattgatgacctggtgcatttt
gacttcatggacccaccagctcctgaaactctgatgcgtgctctggagctgttaaactac
ctggcagccctgaatgatgatggagacctgaccgagctgggctccatgatggcagagttc
cctctggaccctcagctggctaagatggtcatcgccagctgcgaatacaactgctccaat
gagatcctttccatcaccgccatgttatcagtcccacagtgctttgtgcgccccaccgag
gccaagaaggcggctgatgaggccaagatgaggtttgcccacattgacggagaccacctc
accctgctcaacgtttaccacgccttcaaacagaaccatgagtcagtgcaatggtgctat
gataactttgtgaactaccgctcgctgatgtcagcagataacgtgcggcagcagctctca
cgcatcatggaccgtttcaacctgccacggcgtagcaccgagtttaccagtcgtgattac
tacatcaatatccgccgcgcgctggtcaccggcttcttcatgcaggtggcccacctggag
cgtacagggcactatttgacagtgaaggacaaccaggtggtccagctgcacccgtccact
gtgctggaccacaagcctgaatgggtactgtacaacgagtttgtgctgaccaccaagaac
tacatccgcacctgtacagacatcaaacctgagtggctggtcaaaattgctccacagtac
tacgagatgagcaacttccctcagtgtgaagccaagcggcagttggagcgcattgttgct
aaactccaaaccaaggaatacactcaatactaa
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integrated database retrieval system
