KEGG   Pangasianodon hypophthalmus (striped catfish): 113540052
Entry
113540052         CDS       T05759                                 
Name
(RefSeq) WD repeat-containing protein 48-like
  KO
K15361  WD repeat-containing protein 48
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    113540052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113540052
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     113540052
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_C EIF3I Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_EIPR1 WDR54 WD40_MABP1-WDR62_1st WD_LRWD1 ANAPC4_WD40 RAWUL WDR90_beta-prop_4th DUF7349 Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 113540052
NCBI-ProteinID: XP_026792035
LinkDB
Position
Unknown
AA seq 554 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTITEPCILSHLFLLRVQMELD
RSADPPPAIWVSTTKSCVNKWSLKGMHNFRASGDYDNDCSAPLTPLCTQPEQAIKGGASI
IQCHILNDKRHILTKDTNNNVAFWDVLKACKGEDLGKVEFDEEIKKRFKMVYVPNWFSVD
LKTGMLTITLDESDCFAAWVSAKDAGFTSPDGSDPKLNLGGLLLQALLEFWPRTHINPME
EEEGEVNHVNGEQENRLQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLN
ETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVYEK
IINLDTESQTTSSSGTEKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKYFIWK
SGGDLTLHYRQKST
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggcgacgcatcacaggcaaaacgctgctggtcggaggaaagtccaggtttcctatgtg
ataagagatgaagtggagaagtacaaccgcaacggagtgaacgccctgcagctggatccc
gccctgaaccgcctcttcaccgcgggcagagactccatcatccgcatatggagcgtcaat
cagcacaaacaggatccttatatagcttcgatggagcatcacaccgactgggtgaatgac
atagtactctgctgtaacggaaagacgctgatttcagcgtcatcagatactacagttaaa
gtgtggaacgcacataagggcttctgcatgtccacgttaagaactcataaggactacgtc
aaagctctggcttatgcgaaagacaaggagctggtggcgtcggctgggctggacagacag
atctttctgtgggacgtaaacacgctcacggctctgaccgcttccaataacacggtcacc
ataactgaaccttgtattttgtctcatctctttttgctgcgtgttcagatggagctggac
cgatcagcagaccctcctcctgccatttgggtgtccacaactaaatcctgcgtgaacaaa
tggtctctgaagggaatgcacaacttccgagcgtcgggagactacgacaacgactgcagc
gccccgctgaccccactgtgtacacagcctgagcaggccattaaaggtggtgccagcata
attcagtgtcacatcctgaacgacaagagacacatcctcaccaaagacaccaacaacaac
gtggcattctgggatgtgctcaaggcgtgtaaaggggaagacctcggcaaagtggagttc
gacgaggagataaagaagcgcttcaagatggtctacgtgcccaactggttttccgtggac
cttaaaacagggatgctgaccatcaccttggacgagagcgactgctttgctgcctgggtg
tctgccaaagacgccggattcacaagtccggatggatcggaccccaagctgaatctggga
ggactgctgctccaggctctgctcgagttctggcctcgaacacacatcaatccgatggaa
gaagaagaaggagaagttaatcacgtaaacggggagcaggagaaccggcttcagaaaggc
aacggctatttccaggtgcctccacacactccggtaatcttcggcgaggcagggggaagg
acgctgtttaggttattatgtcgagactcgggtggagaaacggagtccatgctgctgaat
gaaaccgttccacagtgggtcattgacattactgtcgacaaaaacatgcccaaattcaac
aagatcccgttctacctgcagcctcactcatcctccggggccaaaacgctcaagaaggac
cgtctgtcggccagcgacatgctgcaggtgaggaaggtgatggagcacgtctacgagaag
atcatcaacctggacacggagtctcagaccacaagctcatcgggaacggagaaacccgga
gagcaggagaaggaagaggacatggccatgctcgccgaggagaaaatcgaactcatgtgc
caggaccaggttctggatccaaacatggacttgagaacagtgaagtattttatctggaag
agcggcggagacctgactctccactacagacagaagtctacgtga

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