Pangasianodon hypophthalmus (striped catfish): 113540079
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Entry
113540079 CDS
T05759
Symbol
sh3tc1
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113540079 (sh3tc1)
Membrane trafficking [BR:
phyp04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
113540079 (sh3tc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_7
TPR_10
TPR_14
SH3_1
ARM_TT21_4th
TPR_NPHP3
SH3_9
ANAPC5
Motif
Other DBs
NCBI-GeneID:
113540079
NCBI-ProteinID:
XP_026792089
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MKATLMLIMDQQNTASFRVKSGSQRFGEYRQELYVEYSSNDVDNKDTSKTVDMEHKPLRA
TGSIKGTSAVSEDKIPTVLALQLAIAEGPDRLPADKDTQEVLCGKLLVLETDLSNISSLI
SEFSAHLVSINSEERTIFITFKSFEEIWKFSTYHRMGFLRQCLGNLLLDQEFWLNALDQE
DSGIAVSIKEEVLNQMYKGFLMQEGSFFGSCTVNQMFDSCTSGSDLYLEKGDIALFEPPF
LGSGWTVLSLADGSRGTKAQPALEPVIPFHEWFLKSCPEWVLVGSGKKCCDLPYQIAVGI
CEATEVYDGNGPDELSFEAGDRIIIEGLLVTCFEWFMGKLERTGDMGLVKTSLVKETDSL
CESNEIFMKQEDRKIFNLEQETIKKEAIAFLKKTCQSNVATVYKLDSASPRSIQNGPTNS
EHVCMKRNIANILNEIREPLQNEQTQTQDSVKLQTDEPTGSTESPQEIPHFTVCSEQDGT
NPDGYHSLLSFLGSRDHRPEFQPLYAAYPEFLLLHFQGHSDEEELVAYLGVAREAARKKR
MSWAQSRICFLLGQLCAGRSKFSQARVYYEEALSVPRDYFTDMYLLSAIYSNLALIYLTQ
KNAEKYLALSERFAALLMAVCDYLSGTEDPEVLKFALKKAVLSQNKPAEARVCFLLAKFY
LKLGEGTNAVPFIERLQILADEMPGACDKLRSHGFLLLARLYSDYGLLHLAESSAWQACL
QVSSSVTDCFCSVSLLLENGRELYGVDIPAQVAPCLTRAAAMESADMEPSLSHAYALCLS
WLFHKHGMPKRAIQYMCSFLNHSSATTLSRSDASAALIWLAWLYICDLQHHSALDVLDSV
LSSLPEHRTTQLEGVIYNMRGITLRHAGDVKQAAENFHAAVDVCEEFEDKHNWATALANF
GFLSLQVNAKRVAEEQLTQAVELFSELEDKDLEIKLNFVVVLLELGKLYVSQGFYEKGKV
CYEWALLISIVYDNSERQLQATRHLCQLYSEACPDEVQCIIYNEHQLNLLHQTGDRTLEA
EILEKISQLYLSLGTKKANRYALDYTKRSIGIYIDMGRKRKEAHGWLQAGKIYHILKQTE
LVDLYVQVAQDIALSTGDTLFILELLEAAGDAFFNSTLDREKAVCFYRDRALPIAVKSSS
VRCQLRLCNKLAELLLQLGQYGEALEYAQTALEISVSLADRLNERVAFHRLATLYHCLSQ
FELAEHHFLKALSLCPSPLQFDEEALYYVKVYQTLGDITFYDLKDPFDAAGYYHLALAAA
MDLGNKKSQLELCTRLATVYHNFLMDRELSLHFYQRARAFAADLNIRRINLSPNQSFRTT
SQYRITALQETT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctactttgatgttgattatggatcagcaaaacacggcgagtttcagggtgaaa
tccggctcccaaagatttggagagtaccgccaggagttgtatgtggagtactccagcaat
gatgtggataataaagacacttctaaaaccgtggacatggaacataagccgttaagagca
acagggagtataaaagggacctcagcagtttctgaagacaagatccccacagtgttggct
cttcagctggctatagcagaaggtccagaccggcttcctgctgacaaggacacacaggaa
gttctgtgcgggaagctgcttgtactggagactgacctcagcaatatttcatccttgatc
tctgaattctctgctcatctggtgtccatcaacagtgaggaaagaaccatatttatcact
tttaaatcatttgaagaaatatggaagttcagcacataccacagaatgggtttcctgcgt
cagtgtttggggaaccttcttttggaccaagaattctggcttaatgctttagaccaggag
gactcaggaattgcggtctcaattaaagaggaggttcttaatcagatgtacaaaggcttt
ctgatgcaagaaggctcattttttgggagttgcacagtgaatcagatgtttgacagctgc
acatcaggcagtgatctttatcttgagaagggcgatattgctctgtttgagcctccattc
ctgggctcgggttggactgtgctatccttggcagatggatcaagagggactaaagcacag
ccagccctggaacctgtcattccatttcatgagtggtttctaaagtcctgtcctgagtgg
gttttggtaggcagtggaaaaaaatgctgtgatctcccgtatcaaattgctgtaggtatc
tgtgaggctacagaggtgtatgatggtaatggacccgatgagctcagctttgaggctggt
gatcgcatcatcatcgagggcctgctggtgacctgttttgagtggttcatgggcaagctg
gagaggactggtgatatgggacttgtcaaaaccagccttgtaaaagaaaccgattctctt
tgtgaatctaatgaaatctttatgaaacaagaagacagaaaaatcttcaacttggaacaa
gagacgattaaaaaggaagctattgcttttttaaagaaaacctgccaaagcaatgttgct
acagtctacaaacttgattcagcaagtccaagatcaattcaaaatggacccaccaacagt
gaacatgtatgcatgaaaagaaatattgccaatattttgaatgaaataagggaacctctt
cagaatgagcagacacagacacaagacagtgtgaagctccaaaccgacgagcccacagga
tccacagagtcaccgcaagaaatcccacactttactgtatgttcagagcaggatggtacc
aatccagatggataccattccctcctgtccttcctaggcagccgtgatcaccggcctgag
tttcagcctctctatgctgcctacccagaattcctcctgttgcatttccagggccacagc
gatgaggaggagctggtagcgtatttaggtgttgctcgggaagctgcaagaaaaaagcgg
atgtcatgggcacagagcagaatctgtttcctcttgggacagctgtgtgcgggaaggtca
aagttctcccaggcacgcgtctattatgaagaagccttaagcgtacccagagactatttc
acagacatgtaccttctctcagctatctactctaacctggccctcatctatctcacacaa
aaaaatgcagagaagtatcttgctctatctgaacgttttgctgctttattgatggcagtc
tgtgactatttatctggcacagaagacccagaggtgttgaagtttgcattgaaaaaggca
gttctgtcccagaacaaacctgcagaagccagggtctgcttcctgctagccaagttttat
ctgaagcttggagaagggacgaatgcagtgcctttcatcgaacggctacagattttggct
gatgagatgcctggagcttgtgacaagttgcggagtcatggttttttactgttagcaagg
ctttatagtgactatggtcttcttcatctagctgaaagctcagcatggcaagcatgtctg
caggtgtcttcctcagtcactgattgtttctgcagcgtctctttgctgttagagaatggc
cgagaactgtatggtgtggacatcccagcacaagtggctccatgtttgactcgagctgct
gctatggaatctgctgacatggagcccagcctttcacatgcctatgccctgtgtctgtct
tggcttttccacaagcatggcatgcctaaaagggcaattcagtacatgtgtagcttcctc
aaccattcctctgctaccacactgagccgttctgatgccagtgctgctcttatctggcta
gcgtggttatatatctgtgacttgcagcaccacagtgctctggatgtgctggactcagtc
ctgtcctccctccccgagcaccgcacaacccagctggagggtgtcatctataatatgcgt
ggcatcactttgagacatgctggtgatgtaaaacaagctgcagagaacttccatgctgcg
gttgatgtctgtgaggagtttgaagataagcacaactgggccacagcactggccaacttt
ggcttcttgagtctgcaggtcaatgcgaagagggtagcagaggagcagctcacccaggca
gtagagctgttctctgagctagaggataaagatctagagataaagctgaactttgttgtt
gtgcttctggagcttgggaagctttatgtctcacagggtttttatgagaaaggaaaggtc
tgctatgagtgggccctgctgatttccatcgtctatgataactcagagcgccaactgcaa
gccacccgtcacctgtgccagctgtatagtgaagcatgtcctgatgaagttcagtgtatc
atctataatgaacaccagctgaacctgctgcaccagacaggagacagaaccctggaggca
gagatattggagaagatcagccagctgtacctcagcctgggcaccaaaaaagcaaataga
tatgctctggactacaccaaaagaagtatagggatctacatcgacatggggaggaagagg
aaagaggctcacggctggctccaggcaggaaaaatctaccacatcctcaaacagactgag
ctggtggatctctatgtgcaggtagcgcaagacattgctttaagcacaggagacacacta
ttcattctggagctgctggaggccgcaggggacgcattctttaacagcacactggacaga
gagaaagctgtctgcttctacagggaccgagccctcccgattgcagtgaaatcaagcagt
gtgcgttgtcagctcagattgtgcaataagctagcagagttgctgctacagctgggacag
tatggagaagctctggagtatgcgcagactgcattagagatcagcgtcagtctggctgac
cgtttgaacgagcgtgtggcgttccatcgtctggctacgctctaccactgcctgagtcag
tttgagcttgctgagcaccacttcctaaaggccctctcactctgtccctcgcccttgcag
tttgatgaggaagccctgtactatgtcaaggtctatcagacactaggtgacattaccttc
tacgatctaaaggatccatttgatgcagcaggttattaccacctcgccctggcagctgcc
atggacctgggcaataagaagtctcagcttgagctgtgcactcgcctggccacagtctac
cacaacttcctcatggatcgtgagctctccctgcacttctaccaacgtgcccgagccttc
gctgctgatcttaatatccgccgcatcaacctatcaccaaatcagagtttccgcaccaca
tcccaatacagaatcacagccttgcaggagacaacctag
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