Pangasianodon hypophthalmus (striped catfish): 113540097
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Entry
113540097 CDS
T05759
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04382
Cornified envelope formation
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04518
Integrin signaling
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113540097 (col4a5)
04518 Integrin signaling
113540097 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113540097 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113540097 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113540097 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113540097 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113540097 (col4a5)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113540097 (col4a5)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113540097 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
FibroRuminTarg
Motif
Other DBs
NCBI-GeneID:
113540097
NCBI-ProteinID:
XP_026792127
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MNKKLKSLQNLVAVLLFISVSVGVQRSECAACNGCGTGWKCDCSGVKGAKGERGFPGQSG
HPGAPGFPGPEGPIGPRGEKGDDGPPGPPGLKGIRGPPGLPGFAGTPGIPGLPGLDGAPG
PKGIAGCNGTKGDRGFPGSPGFPGIDGPRGTTGEPGQKGEPGEVISTGTHGTPGGPGSIG
QPGPRGDPGLPGLPGPTGPPGPRGYDGPPGTPGPPGPKGNMGLNFQGPKGEKGEPGLQGP
PGPPGQVDQLIGETDGVIHRGEKGDRGPPGPPGYPGPPGPSGPSGGPKGEKGEPGESGKR
GKPGKDGDPGPPGLQGVTGDPGVPGLPGRAGERGEKGERGLPGPPGVVTSPSESREGPKG
DPGLPGAPGRKGEPGLPGVQGPPGQPGRPGIGSQGPPGPPGYQGERGQKGDQGSPGVSLP
GSPGRPGPPGLQGPSGPPGPPGISTGGENCLPGPAGLPGLNGEPGYPGEIGQKGEKGDTC
VNCFSSGNLIPGPQGPPGPPGPAGSPGLPGFKGERGPPGSPGFMGPPGLQGSQGSPGLPG
EKGDPGEAIALDAMKGDKGDTGFPGPPGLPGRDGAPGRNGAPGPPGPKGAPGSLMLKGER
GLPGDPGLQGPPGDRGPPGSPGFGPQGPPGEKGFQGVSGRQGLPGPPGQKGEPGQTVSEK
GAPGPRGRDGDPGLPGNPGDPGQPGSPGFPGLPGQKGEPGLPGIGLPGPPGPKGFPGIAG
SPGGPGRLGPPGVDGLPGVPGLRGPKGAPGYGIPGPQGPPGLPGSKGFPGPKGDPGFPGN
PGAPGRPGIDGPPGYKGEPGLPGPPGARGPQGPAGFGLPGLPGPAGPPGPMGNPGSPGLN
GEKGDPGSPGLDIPGLPGDQGSPGLPGPPGSPGPPGNPGNPGQDGLPGFAGQKGEMGVMG
APGPAGNPGSPGVPGFPGPKGDNGQSGLPGIQGVNGAKGDKGEPGLRGPAGISIPGALVK
GAKGEPGPQGISGVSGAKGIPGLPGDPGIPGQDGLPGPPGPPGPKGDSGIPGTTGVPGAP
GQKGSMGEMGLPGPPGVKGSPGQPGRPGQPGSPGAPGFSGPKGDPGTPGFGQPGAPGPKG
EPGSPGTPGTAGPKGQQGPPGSSGIPGGPGPKGDPGLPGLQGAPGATGPKGLDGVPGAPG
LAGSPGRPGTPGQPGLPGAPGDKGQAGRDGIPGPAGLKGEPGIPGYGLPGPPGIPGMPGQ
KGDPGLPGQPGSPGFPGPKGDIGSAGATGSPGSQGPPGPPGQSIQGPKGFQGPPGPPGRG
GPEGPPGPPGPEGPRGPPGSGGVKGEKGYSGNPGSPGLPGQKGDTGPQGFTGPPGPPGTV
GLKGDVGLPGITGFPGPKGQPGNSGPAGLRGDPGEPGPPGLPGDPGQAPAPIVIKGVQGP
PGPSGSQGPPGPPGKAGLEGLPGQSGSNGDPGPDGPPGFTGPAGRKGESGPTGQPGQQGL
PGPPGPDGLQGPPGPPGLSSAAHGFLITRHSQTTDVPQCPFGTSLIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGESI
KPYISRCAVCEAPAMVIAVHSQTIQLPSCPKSWEPLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSSPFIECHGHGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSR
CIVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagttaaagagtctgcagaacctcgtcgccgtgctcctcttcatatctgtg
tccgtaggggttcagcggtctgagtgcgcggcatgtaatggctgtgggactggatggaag
tgtgactgcagtggagtgaaaggagcgaagggtgaaagaggttttccaggtcaatcaggt
catccaggtgcaccaggattccctggaccagaagggccaattggaccccgtggagagaag
ggtgatgatggacctccaggaccgcctggacttaaaggaataagaggacctcctggactc
cctggatttgcagggacgccaggaattccaggtcttccgggattggatggggctccaggt
ccaaaaggaattgcaggctgtaacggaacaaagggtgaccgaggattccccggaagtcca
ggattccctggtatagatggtccacggggaacaactggtgagccaggacagaagggagag
cctggtgaggttatctctacaggaactcacggaacaccaggaggcccaggaagcatcggt
cagccaggccccagaggagatccaggactgcccgggttgccaggtcctactggtcctccg
ggtccaagaggttacgatgggccaccaggtacccctggtccaccagggccaaagggaaat
atggggctgaacttccaagggccaaaaggagagaagggtgaacctgggttgcaggggcct
cctgggccaccagggcaagtcgaccaattaataggtgaaacagacggcgtgattcatcga
ggagagaagggtgaccgtggaccacctggaccccctggatatcctggccctcctggacca
tctggcccaagtggcggtccgaagggagagaagggagagccaggagaatctggaaagagg
ggtaaacctggtaaagatggggaccctggccctcctggacttcagggtgtcacaggagac
cctggtgtacctggtcttccaggaagagcaggagaaagaggtgagaaaggagaacgagga
ctacctggacctccaggcgtggtgacatccccatccgagagccgagaaggacctaaagga
gatcctgggcttcctggagcccctgggaggaaaggagagccaggactacctggtgtccaa
ggaccaccaggtcagccaggtcgtccaggaatcggaagtcaaggcccacctggccccccc
ggatatcaaggagagagaggacagaagggagatcaaggatcgcctggagtttctcttcca
ggttctcctggcagacctggaccaccaggtttacaagggccttcaggacctccaggacct
ccaggaatatccaccggtggtgaaaactgcctcccagggcctgctggacttccaggcctg
aatggggaacctggttacccaggagagataggccagaaaggtgaaaagggggacacgtgt
gtgaattgtttctcaagtggcaatctcatcccaggaccacagggtccacctggaccccca
ggacctgcaggcagtcctgggctccctggttttaaaggagagagaggacccccaggcagc
cctggttttatggggccaccaggtttacaaggatcacaaggttcacctggactacctgga
gagaagggtgaccctggtgaagcaattgcccttgatgctatgaagggagataaaggagac
acaggattccctggccctccaggtctgcctggccgggatggagcacctggtcgaaatgga
gctcctggaccgcctggtcccaaaggtgcacctggttccctaatgcttaaaggtgaacgt
ggccttcctggagatcctggtctccaaggtcctcctggagacaggggccctcctggttcc
cctggatttggcccacagggacctcctggagagaaaggattccagggtgtgtcaggaagg
caaggacttcctggacctccaggtcagaaaggtgaaccaggtcagactgtctctgagaaa
ggggcacctggacccagaggacgtgatggagaccccggtctaccaggaaatccaggtgac
ccaggccaacctggttcccctggtttcccaggattacctggccaaaaaggagaacctggt
ctcccgggtataggcttgccaggcccaccaggtcctaaaggattcccaggtattgcggga
agtcccggcggccctggcaggcttggacctcctggtgtggatggactacccggtgtacct
ggactccgtggacctaagggcgcacctggttatggtattcctggccctcaggggccccca
ggtttacctggcagtaagggttttcccgggcctaaaggtgatcctggattccctggaaat
ccgggtgcacccggtcgacctggtattgatggtcctcccggctataaaggtgagcctggt
cttcctggtcctccgggtgcacgtggccctcaaggccccgctggttttggtttacctgga
ctacctggaccagcaggacctcctggacctatgggcaatcctggttcccctggtttgaat
ggtgagaaaggagaccctggttcccctggactggatattccaggcttgcctggtgaccag
ggtagccccggattgcctggaccacctggttctcctggccctcctgggaatcctggtaac
cctggccaagatggactacctggattcgctgggcaaaagggagaaatgggtgtgatgggt
gctccaggacctgctggtaatcctggcagccctggtgttccaggatttcctggaccaaaa
ggtgataatggtcagtcaggactgccaggaattcaaggtgtgaatggagcaaagggagat
aaaggtgaaccaggtctaagaggccctgctggtatcagcattcctggtgccttagtaaaa
ggagcgaagggtgaaccaggacctcaaggaattagtggagtttcaggagcgaaaggtatt
cctggccttccaggagatccaggtatccctggacaggatggacttcctgggccacctgga
cccccaggtcccaagggagattccggaattccaggaacaacaggagtccctggtgctcca
ggacagaaaggcagcatgggcgagatgggattacctggccctcctggagttaaaggaagt
ccaggtcagcctgggcgacctggacagcctggatctccaggagcaccaggattctcagga
ccaaaaggagaccctggaacaccaggatttgggcaaccaggagctccaggaccaaagggt
gaacctggctctcctggtacccctggaactgcagggccaaaaggtcaacaggggccccca
ggaagttcagggatacctgggggccctggcccaaagggtgatcctggcctcccaggatta
caaggtgcacctggcgctactggtcctaagggtctggatggagtcccaggtgcccctggt
ctagcaggatcacctggaaggccaggaacccctggccaacctggtttgccaggtgcacct
ggagacaagggtcaagctggtcgtgatggtattcctggaccagcaggattgaagggagag
ccaggtataccaggttatggactcccaggtcctccaggcattcctggaatgccaggtcag
aaaggagaccctggccttcctggccagcctggcagccctggtttccctggaccaaagggt
gatataggatccgctggtgcaacaggcagccctggttctcaagggccccctggtcctccg
ggtcagtccattcaaggtcctaaaggcttccagggtccccctggaccaccaggaagagga
ggcccagaaggtcctccaggtcctcctggcccagaggggccccgtggaccaccaggttct
ggaggagtgaagggtgagaaaggctactctggaaatcctggatcacctggtttacctgga
cagaagggagacactggaccacaaggttttacgggccctcctggacctcctggaactgtc
ggacttaaaggagacgttggccttccgggcattacaggattcccaggacctaaaggtcag
cctggtaattctgggcctgctggtctgcgtggtgatcccggtgaacctggtcctccaggt
cttcctggtgacccaggtcaagctccggccccaattgtgataaagggtgtgcaggggcct
cctggtccttcaggatcccaaggacccccagggccaccaggaaaggcaggactggagggg
cttccaggtcagtctggtagtaatggtgacccaggtcctgatggacctccaggattcact
ggtccagctggaaggaaaggagaatcaggaccaactgggcagccaggtcagcagggttta
cctggccctcctggtccagatgggcttcaagggccaccaggtcccccaggtctgtcatca
gcagctcatggcttcctgattacgcgacacagtcagactacagatgtaccgcaatgccca
tttggcacctctctgatctatgatggctattctctgctttacgtgcagggcaatgagagg
gcacatggccaagacctgggtacggctggaagttgtctacgtcgtttcagcaccatgcct
ttcatgttctgcaacatcaacaatgtttgcaactttgcttcccggaatgactactcatat
tggttgtctactcctgaacccatgcccatgagcatggctcctatccagggagaaagcatc
aaaccctacatcagcagatgtgctgtatgtgaagccccagctatggtgatagcagtgcac
agccagaccatccaactgccatcatgtccaaagtcctgggagccactgtggattggctat
tccttcatgatgcacactagtgcaggtgcagagggctctggtcaggctctggcctcacct
ggctcctgtctggaggagtttcgttcatctcccttcattgagtgccacggccacggaacc
tgcaactactatggcaactcctatagcttctggctggccaccgtcgaacagtctgaaatg
ttcaggaagccacaatctgagacgctgaaagcagggaatctccagacacgcgtgagtcgc
tgtattgtgtgtatgaagaggacgtaa
DBGET
integrated database retrieval system
