Pangasianodon hypophthalmus (striped catfish): 113540143
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Entry
113540143 CDS
T05759
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113540143 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113540143 (copa)
Membrane trafficking [BR:
phyp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
113540143 (copa)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113540143 (copa)
Exosomal proteins of bladder cancer cells
113540143 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
TPR_COPA_B
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR41
NBCH_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
113540143
NCBI-ProteinID:
XP_026792217
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVEHQCXXTLLGHLDYIRTTFFHHEYPWILSASDDQTIRLWNWQS
RTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETEVRGI
TGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAWELDT
CRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAHPNLN
LFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFP
VFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVWVARN
RFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQKRSLA
TVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGVFIYT
TSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFKLALV
NRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEVALEA
AKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMMKIAE
IRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDLEKEM
IPEVDPNAELLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMVADLDMDAPGGEG
WGEDAELHLDEDGFMDAQEGLGEEGALGKEEGGGWEVEEDLDLPPELDVPSGAGGGAEGE
GFFVPPTKGISPAQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVCFEPLKPLFMQAFS
RGRVSYVGLPSLPCLFSHPLRDGGTTEGRRQRDGQKGGVPAVGLHLRDLIARLQQCYQMT
TAGRFDEAVDKFRSILLSVPLLVLDNKQEIAEAQQLITICKEYIVGLTMETERKKLPKET
LEQQKRQCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLKNFKTAAGFARRLLELGPKPEV
AQQTRKILAACEKNLTDAHQLNYDPHNPFDLCAASFTPLYRGRPVEKCPLSGACYCPTYK
GQVCRVTQVTEIGKDVIGLRVSPLQFR
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccaaattcgagaccaaatcagctcgagtgaaagggctgagtttccacccgaag
cggccgtggatcctggccagtcttcacaacggcgtcatccagctgtgggattatcgcatg
tgcaccctcatcgataagttcgacgagcatgacggtccggtgagagggatcgacttccac
aagcagcagcctctgtttgtctcgggtggagacgattacaaaatcaaggtcgaacatcag
tgtnnnnnnaccctgcttggacacctggactacatccgcaccaccttcttccaccatgag
tacccatggatcctgagcgcttcagatgatcagaccatccgtctgtggaactggcagtcc
aggacctgtgtctgtgttctgacaggtcataaccactacgtgatgtgtgctcagttccac
ccttcggaggacctggtggtgtcggccagcctggatcagaccgtgcgggtgtgggatatc
tccggtttgaggaagaagaacctgtctccgggcgctgtggaaacagaagtgcgtggcatc
acaggggtggatctgtttggagcatcagatgctgtggttaaacacgtgctggagggtcat
gatcgaggggtgaactgggcagcgttccatcccagcatgcctttgattgtgagcggagct
gatgaccgtcaggtgaagatctggaggatgaacgagtcgaaggcgtgggagctggacacc
tgtagggggcactacaacaatgtgtcctgcgctgtcttccacccacgccaggagctcatc
ctgtccaactccgaggataagagcatccgagtgtgggacatgtccaagaggaccggtgtc
cagaccttccgcagggaccacgaccgcttctgggtgctcggagctcatcccaacctcaac
ctgtttgctgctggtcatgacagcgggatgttggtgtttaagttggagcgtgagcgtcct
gcctacgctgtgtacgggaacatgctgtactacgtcaaggaccgcttcctgcgtcagctc
gacttcaacagcagcaaagacacggctgtcatgcagctacgcagcggctctaagttccct
gtcttcagcatgtcgtacaatccagcggagaacgcagtgctgctgtgtacgagagccact
aatctggagaacagcacgtatgatctgtattccatccctcgagagagcgactcgcagaac
cctgatgctccagagggaaagcgctcatcaggactcacggcagtgtgggtggcccggaat
cgcttcgctgtgttggaccgcatgcactcgctgctgataaagaacctgaagaatgagatt
gtgaagaaggttcaggtgccgagctgtgaggagatcttctacgcagggacgggttctctg
ctgctgagggacgcagacggagtcacgctgttcgacgtgcagcagaaacgctcactcgct
accgtcaaaattgccaaagtcaaatacgtggtgtggagcgcagacaccagccacgtcgcc
ctgctggccaaacacgccattatgatctgcaacaggaagttagagagtctgtgtaacatc
catgagaacatccgtgtgaagagcggcgcatgggatgagagcggcgtgtttatttacacc
acctccaaccatatcaaatacgccctcacctcaggtgatcatggtataattcgcaccctg
gacctgcccatttacgtgacccgtgtgagggggaacagtgtgtactgtctggatcgggag
tgcagaccccgtgtcctcaacattgacccgaccgagtaccgcttcaaacttgcacttgtt
aaccgcaaatatgacgaggtgctgcacatggtgcgtaacgctaagctggtgggtcagtcc
atcattgcgtacctgcagaagaagggctacccggaggtggcgctacacttcgtcaaggat
gagaaaacccgcttcagtctggcgctggagtgcggaaacatcgaggtggcgctggaggcg
gcgaaggctctggacgagcggagctgctgggaacgtctgggcgaggcggctctgctgcag
ggtcatcaccaggtcgtggagatgtgctaccagagaactaagaactttgataagcttacc
ttcctttacctgatcacagggaacctggccaagctccgcaagatgatgaagatcgctgag
atcaggaaggacatgagtggacattatcagggtgctctgtatctgggagacgtcagtgag
agagtgcgcatcctcaagaactgtggacagaagtctctggcgtacctgactgcagcgaca
catggcatggatgaggaggctgaggcgctcaaagagaccttcgacctggagaaggagatg
atccccgaggtagacccaaacgctgagttgttgcagcctcctcctcccatcaaccctctg
gacacaaactggcccttgctcactgtctctaagggcttcttcgagggagccatcgctgct
aaaggaagagcaggtcagatggtggccgatctggacatggatgctcctggaggagaaggt
tggggtgaagatgcagagctccacctggatgaagatgggtttatggacgctcaggagggt
ctgggtgaggaaggagcgctggggaaggaggaaggaggaggatgggaggtcgaggaggat
ctggaccttccacctgaactggatgtgccatctggtgctggaggcggtgctgaaggagaa
ggcttctttgtcccacccaccaaaggtattagccctgcccagatgtggtgtaacaactca
cagttaccggttgaccacatcctcgccggatccttcgagacagccatgaggctgctgcac
gatcaggtgggcgtggtatgcttcgagccattgaagcccctcttcatgcaggcgttctcg
cgggggcgcgtgtcctacgtggggcttccatctctgccctgtctcttctcccatcctctg
agggatgggggcacgaccgagggcaggagacagcgagacgggcaaaagggcggcgtcccg
gcagtggggctgcacctgcgtgacctcatcgcccgcctgcagcagtgctaccagatgacc
accgcagggcgctttgacgaggccgtcgacaagttcaggagcatcttgctgtccgtccct
ctgctggtgctcgataacaaacaggagatcgctgaggcccagcagttgatcactatctgt
aaagagtacattgtgggtctcaccatggagacggagaggaagaagcttcctaaagagacc
ctggagcaacagaagaggcagtgtgagatggcggcatacttcacacactgtaacctgcag
ccggtccacatggtgctggtgttgcgcacggcgctcaatctcttcttcaaactgaaaaac
tttaagacggccgcagggttcgcacgccgcctgctcgagctcggacccaaacctgaggtg
gcacagcagacgcgcaagatcctggcagcatgcgagaagaacctgactgatgcccaccag
ctcaactacgacccccacaaccccttcgacctgtgcgccgcctccttcaccccgctgtac
cgaggacgccccgtggagaagtgccctctctccggggcctgctactgccccacctacaaa
gggcaagtgtgcagggtcacacaggtgactgagatcggtaaggacgtgatcgggctgcgt
gtgagtcctctgcagttccgctaa
DBGET
integrated database retrieval system
