Pangasianodon hypophthalmus (striped catfish): 113540172
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Entry
113540172 CDS
T05759
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113540172 (zswim8)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
113540172 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
113540172
NCBI-ProteinID:
XP_026792267
LinkDB
All DBs
Position
Unknown
AA seq
1935 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRVRAVKDPLQIGFHLSATVLSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQTEVAAHACASMCDEMVVLWRLA
VLDPTMSPQRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKNASFGWARAAQPQRGAKAGMSGEPLEPGGGGGGGGRAGGSESGAPEH
KSRGNSHPPQQEVAVRPKETIVSKRKAMSGVNSGGMLVRLGGGMSLSVDESTKGGYKACS
SSLSTSGKGKLTQSGKSSCGSSSAAGGKHPSAKRRTSSEDSSLEPDMAELSLDDGSSLAL
GAEASNTFDFLPPPPEMLPSPSSLLREPRKYSSSSGGGNITKERAFEGKRGIHAAIPLAA
EAPHCFPKESPMAVLAVAVEKEVDVEAELEENGGDVDPVEDALPSISAMVTAKPSRSRRE
GEGSNTAGTPGPQIPEAAAGGDPVGEDDYQAYYLSAASEEGAERGVPDSNLEEEPDIFAG
IKPLEQEGRMEVLFACAEALYAHGYSNEACRLAVELARDLLANPPDLKVEQPQTKGKKSK
VSTSRQTQVATKTLSKAAFLLTVLSERLEFHNLAFSTGMFSLELQRPPASTKALEVKLAY
QESEVVALLKKIPLGLVEMTAIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSP
TGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMI
TYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQKSPSKHATHGSSATGGVS
KHATPATTGSSTSVQSVSGGGAAGQQGGLTGTGVQGTASGDAASESREQDGAQSSSCEQQ
NEVASFKPEGTVPSRLALGGRGAYGSRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTL
SRRPLRGGWPASSWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRR
PECHAPHVPNQPSEAAAHFYFELAKTVLVKAGGNSSTSIFTQPSASGGHQGPHRNLHLCA
FEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVAS
LADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEE
AAKGGGVYPEVLFEVAHQWYWLYEQTVGGVSASQREGPSRCGANGGAARRPPEGNCGVLE
SSVAMDSAGVAAVTASVSAAAVVPVISVGSTLYQSHTLPGTAMAHTPGLHPYTTIQAHLP
TVCTQQYLGHQLQHVPRPAVFPVSGTAYPQGMHPAFIGAQYPFSVTSGPHPPMAATAVTF
PGVPVPSMTQIAVHPYHTAEAGLPLSTTVAVGGVHSGSTIQAIQGTSLPGLSSQPPSLVS
APFPVEDEQHSQPVSQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKW
LLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQ
RCQQAYLQYINYRLIHLTPADYDDFVNIIRSARGAFCLTPMGMMQFNDVLQTLKRGKQTK
ELWQRISLEMATFSP
NT seq
5808 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgcagagtgggaagacggagagaggttctccttcgaggactcggat
cgattcgaagaggattccctttgctccttcatctcagaggcagaaagcctgtgtcagaat
tggagaggatggagaaaacagtccgctggtcccaactcacctactgttaaaattaaagat
ggacaggtcatccctctggtagagttgtcagccaagcaagtggcattccatatcccgttt
gaggtggtggagaaagtttatcctcctgttcccgagcagcttcagcttcgcatcgcctac
tggagctttcctgaaaatgaggaggatatcaggttgtattcctgcttggccaatgggagc
cccgatgagttccagcgtggagagcagctctatcgggtgagagctgtgaaagatcccctg
cagataggtttccatctcagtgccactgtcctctcaccccaggctggccagtcaaagggt
gcctacaatgtggctgtcatgtttgaccgttgccgcatcacttcctgcagctgcacctgt
ggagctggagcgaaatggtgtgctcatgtggtggcgctctgcctcttcaggattcataat
gcgtctgctgtgtgcttgcgagcccccgtatccgagtccctgtccagactgcagagggac
caactgcagaagtttgcacagtatctcattagtgagcttccgcagcagatcttacccaca
gcccagcgtcttttagatgaacttctgtcctcacagtccactgcaattaacacagtatgt
ggagctccagaccctactgctgggccttcagcttcagaccaaagcacctggtacctggat
gaatccaccctcagtgacaacattaagaagacgctgcacaagttctgtggcccctcccca
gtagtgttcagtgatgtgaactcgatgtatctctcatccacggagcccccagctgcagct
gagtgggcctgcttactgaggccactgaggggcagagagccagagggcatctggaacctt
ctgtccatcgtcagggagatgttcaagaggcgagacagcaatgctgcaccacttttggaa
atcctcactgaacagtgcctcacctatgaacaaatcattggttggtggtacagtgtgcgg
acatctgcatctcacagcagtgccagtggacatacaggccgcagtaatgggcagacggag
gtagctgctcacgcctgtgccagcatgtgtgatgaaatggtggtgctctggaggctggct
gtgcttgaccccaccatgagcccccagaggcgtttggagcttgctgcccagctcaagcag
tggcaccttaaagtgattgagattgtgaagcggggacagcaccgcaagtctctggacaaa
ctcttccagggtttcaaaccggctgttgagtcttgttacttcaactgggaagtggcatac
cctctgcctggcatcacctactgcagtgcagacaaaaagaacgcgtcctttggctgggcc
cgggcagcgcagccacagagaggggccaaagcagggatgagcggggaacctctggagcct
gggggaggaggaggaggaggtggacgagctgggggatctgaatctggagctcctgaacac
aaatcacgtggcaactcccacccaccccagcaagaggtggccgtgcgtcccaaagagacc
attgtgagcaaaagaaaagccatgtctggagtgaacagtggaggtatgttagtacgttta
ggtgggggtatgtctctatctgtagatgaaagcacaaagggtgggtataaagcttgcagc
tcttcgctatctactagcggcaaaggcaagctaacgcagagtggtaagagttcgtgtgga
agttcgagcgctgcaggtgggaagcatccaagtgctaaacgccgcactagcagtgaggac
agctctttggagcctgatatggctgagctgagcctggatgacggctctagcctggcattg
ggagcagaggcgagcaacacttttgacttcttgcctccaccccctgagatgctgccctca
cccagctctctcctcagagaaccacgcaagtacagcagcagtagtggtggtggcaacatc
accaaggagcgagcgtttgagggtaaacgtggcatccatgcagcaataccactggcagct
gaagcccctcactgcttccccaaagaaagcccaatggctgtcttggcagtagcagtggag
aaagaggtggatgtggaggcagaacttgaggaaaatggaggagatgtagatccagtagag
gatgctctgccatctatatcagctatggtcacagcaaaaccttctcgaagccgaagagag
ggagaaggaagcaacacagcaggtacacctggaccccagatcccagaggcagcagctggt
ggagacccagttggtgaggatgattaccaggcgtactatctcagtgcagcctctgaggag
ggagccgagagaggagtgccagacagcaaccttgaggaagaaccggacatcttcgctgga
atcaaacctctggagcaggaaggtcggatggaggtgctgtttgcctgtgcagaggctcta
tatgctcatggttacagtaatgaagcatgtcgtctggctgtggagctagcgagagacctc
ctggccaacccccctgacctcaaagtggaacagccacagacaaagggtaagaagagtaag
gtgtcaaccagcagacagacgcaagtggctaccaaaactctttccaaggcagcgttcctg
ctcacagtgctgagtgagagactggagttccataacctagcctttagcactggcatgttc
tcattggagctccagagacctccagcttccaccaaggccctggaggtgaagctggcatat
caggagtcagaggtggttgctttgctgaagaagattcctctgggtcttgtggagatgact
gctataagggatagagctgagcagttacgcgacggaaacttctgtgattatcgtccagtt
ctgcccctaatgctggccagtttcatttttgacgttttgtgtactccagtggtctctccc
acgggttcacgtccacccagtcgtaatcgtaacaatgagatgccaggtgatgaagagctg
ggctttgaggctgctgttgctgctctaggtatgaagactacggttagtgaagcagagcac
cctttgctgtgtgagggcactaggagggagaaaggagacctcgctttggctcttatgatc
acctacaaggatgaccagagcaagctgaaaaagattttagacaagctccttgaccgtgag
agtcaaacccataagccccagactctcagctcattctactccagtaaaccggctgcaggt
agccagaagagcccatccaaacatgcgactcatggaagcagtgccacaggaggtgtgtcc
aaacacgcaacgccggctacaacaggaagttccacctctgtgcaaagtgtttcaggtggt
ggggcggctgggcagcagggtgggctgacgggcactggggttcagggcacggcatcagga
gatgcagccagtgagagccgagagcaagatggagctcagtcatcctcgtgtgagcagcag
aatgaagtggcttctttcaagcctgagggcacggtgcccagccgcctggcactcggtggc
cggggagcctatggatcacgctgctggggctcacctgtacggcagaaaaaaaagcacaca
ggcatggcaagcattgacagtagcgctcctgagaccacctctgacagctcccccacactc
agtcgtcgtccgctgagaggtggatggccggcgtcttcttgggggaggggtcaagacagt
gacagcatcagcagctcatcttctgattcgttgggctcctcgtcatccagtgggtcgcgc
agagctgggggaggagccagagccaagagcactgacaccagcaggtataaagggcgtcgc
cctgaatgccacgctccacatgtgcccaaccagccatcggaggcggcagctcacttctac
tttgaactggccaagactgtgttggtaaaggctggaggaaacagctcgacctccatcttt
actcagccttctgccagtgggggccaccaggggcctcaccgcaacctgcacctgtgtgcc
tttgagatcggcctttatgccttgggcctgcacaactttgtgtctcccaactggctgtca
aggacgtactcatctcatgtgtcctggatcacaggccaagccatggagattggcagtgct
gctcttaacatccttgtggagtgttgggatggtcatctcacccctcctgaagtggcgtca
ctggcagaccgggcatcacgggcccgagaccccaacatggtacgagctgcagctgaactc
gcactgagctgtctacctcacgctcatgccctaaaccccaacgagatccagagggcactg
gtgcagtgcaaagagcaggataacttgatgctggagaaggcgtgcatggcagtagaggag
gcggcaaagggaggaggtgtgtaccctgaggtattgtttgaggtggcccatcagtggtac
tggctgtatgagcagacggtgggtggagtctctgcatcacagagggaggggccaagccga
tgtggggcaaatggtggagcggctcggagacctccggaagggaactgcggtgtgttggaa
agctccgtggccatggactctgccggtgtagcagctgttactgcgtcggtcagtgcagcc
gctgttgtgcccgttatatctgtgggctccaccctctaccagtcgcacacactgccgggc
acggccatggcacacacgccaggtctgcacccctataccactatccaagcccatttgcct
actgtctgcacccagcagtatctgggccatcaactccagcatgtcccccgacctgccgtc
ttccccgtgtccggtactgcatatccacagggaatgcatcctgcctttattggtgcgcag
taccctttctctgtaacctccgggcctcatcctcccatggcagcaactgcagtcaccttc
cccggagtccccgtaccgtccatgactcagattgctgtccacccctaccacaccgccgag
gcgggtttacccctcagtactactgtggcagtcggtggggttcactcaggctccaccatc
caggccattcaggggacatctcttcctggcctttcttctcagccaccttcattggttagt
gcgccgttccctgtggaagacgagcagcacagtcagcctgtcagccagcaggggctgcac
tacctgcattcggcctacagagttggtatgctggccctggagatgctgggtaggagagct
cacaacgaccatcctaacaacttctcccgcagccccccatacacagaggatgtgaaatgg
ctgctaggcctcgctgcacgactcggtgtgaattacgtgtatcagttctgtgtgggggct
gccaaaggtgtgctgagtccattcgtgctgcaggagatcattatggaggctctgcagagg
ctgaatcctgcacacattcatgctcacctccgcactcctgccttccaccagctcgtgcag
cgctgccagcaagcctacctacagtacatcaactatcggctgatccacctgaccccggca
gactacgacgactttgtaaacataattcgaagtgcccgcggggcgttctgtctcaccccg
atgggcatgatgcagttcaacgatgtcctgcagaccctgaagagggggaagcagaccaag
gagctgtggcagcggatctcgctggagatggccacgttttcaccctga
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