KEGG   Pangasianodon hypophthalmus (striped catfish): 113540293
Entry
113540293         CDS       T05759                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04115  p53 signaling pathway
phyp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    113540293 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    113540293 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:phyp04121]
    113540293 (cop1)
Enzymes [BR:phyp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     113540293 (cop1)
Ubiquitin system [BR:phyp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    113540293 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     113540293 (cop1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_RIG_2nd EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st CREPT Beta-prop_NUP159_NUP214 zf-rbx1 UvrD-helicase zf-RING_10 WDR90_beta-prop_4th Sina_RING zf_C2H2_10 Tma16
Other DBs
NCBI-GeneID: 113540293
NCBI-ProteinID: XP_026792509
LinkDB
Position
Unknown
AA seq 697 aa
MSGCRQQQQQQQQQSGGALGSVPGTSSGSTATANIANNGGSSANANGNGISLRSLGSGSE
AQLLGAQRPSLSGANHSKKRPLYNGLINPYEDKSNDFVCPICFDMIEEAHMTKCGHSFCY
KCIRRSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEEKRLKRDHPNGTKWQF
FQDVLGTDQEHLDLANVNYMLELLVQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQ
LQKELNFLEEDIKSVQDMSGLYSPVIDMDPNLDSTVPQFGDAHSPAPSSSIIEPTEYIQP
PQFGGSSQGKRQTSYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFME
CLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVI
QDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEK
RCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFG
CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLR
SFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKED
DTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELI
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgtcaggctgtcggcagcagcagcagcagcagcagcagcagtccggtggtgctttggga
tctgtaccgggaacgagctctgggagcacggcgactgctaacattgctaataacgggggg
agcagcgctaatgctaatggcaatggcatttctttgcgaagtctcggatctgggagcgag
gcgcagctactgggtgcacagagacccagtttatccggcgccaaccacagcaagaaaaga
cctctatataacggtcttattaatccatatgaagataagagtaatgattttgtgtgtccc
atatgttttgacatgatagaggaagctcatatgactaaatgtggtcacagtttttgttac
aaatgtatacggcggagtttagaggacagcaacaggtgcccgaagtgtaattacattatt
gacaatgtggatcagctgtaccccaacttcttagttaatgagctgatcctcaagcagaaa
cagagatccgaagagaagcgactaaaacgggaccaccctaatggaaccaaatggcagttt
ttccaagatgttcttggcacagaccaggagcatctggatttagcaaatgtcaactacatg
ttggaactgctggtgcagaaaaagaagcagcttgaagcggaatcgcaagcagctcagcgt
caaatcctaatggagttcttgaaagaagctaggaggaataagagagagcaactagagcaa
ttacagaaagaactgaactttttggaagaggacataaagagtgttcaggatatgagtggg
ctgtactcaccagttattgatatggaccccaatttggacagcactgttccccagtttgga
gatgcacactctcctgcacccagcagtagcatcattgaacccacagagtatatccagcct
cctcagtttggaggaagctcacagggtaaaagacagacatcatacaatagcactctggcc
tctcggagaaagaggctaacagcacactttgaggacttagagcagtgctacttttccaac
agaatgtcacgaatcacagatgacagcagaactgttaaccagctggatgacttcatggag
tgtctctccaaattcacacgttacaactctgtacgccctctggccactctgtcttatgca
agcgacctctacaatggttctagtattgtttctagcattgagtttgaccgtgactgtgat
tatttcgccattgccggtgtcaccaagaaaattaaagtttttgagtatggaacagtgatc
caggatgctgtggacattcattatcctgtcaacgaaatgacatgcaactccaaaataagc
tgtatcagctggagtagctaccacaagaacctgttggcaagcagtgactatgagggaaca
gtgattctttgggatgggtttacggggcagaggtcaaaggtttatcaggagcatgagaag
agatgttggagcgttgatttcaaccttatggatcccaaacttttggcatcaggctcagat
gatgcaaaagtcaagctgtggtccactaacctggataactcagttgccagcattgaagcc
aaggccaatgtgtgctgtgtcaaattcagcccaacatctaggtatcacctcgcatttgga
tgcgcagaccactgtgtccactactatgatttgcggaacactaagcaacccatcatggtc
ttcaaaggtcaccggaaggctgtgtcctatgccaagttcgtcaatggagaagagattgtg
tctgcctccacggacagccagctaaagctgtggaatgtgaacaagccccactgcctgcgc
tctttcaaaggccacattaatgagaaaaactttgtaggcctggcctccaatggagattat
gtagcatgtggaagtgagaacaactccctatatctgtattataaggggctctccaaaaca
ttgctgaccttcaagtttgacactgtgaagagcgttctggacaaggacaagaaggaagac
gacactaacgagtttgtcagtgccgtatgttggcgggctttaccagacggggagtccaat
gtgctgattgcagccaacagtcaaggaacaatcaaggtacttgagctaatttga

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