Pangasianodon hypophthalmus (striped catfish): 113540295
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Entry
113540295 CDS
T05759
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113540295 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113540295 (copb2)
Membrane trafficking [BR:
phyp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
113540295 (copb2)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
113540295 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
113540295
NCBI-ProteinID:
XP_026792513
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIVTGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYLADKVAASQESNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIGYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNAAMVSKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLSKV
NQKAGESLADPTEYENLFPGLKEAFLAEQYLRETSLGKSRPATDYPLVTPNEERNVLEEA
SGYEPKNILPTHTQQTAGPEEAAVEAEVSAVRAAPVVTPVASVAPPQPEPAKKVEEDITQ
FREKTLEELEDDLDNLELDDIDTTDVNLDDDFLDD
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctggacatcaagcgcaagctcacggctcggtcggaccgcgtgaaaagc
gtggatctccatcccaccgagccgtggatgctcgccagtctgtacaacggcagcgtgtgc
gtctggaaccacgaaacacagaccttggtgaagacgtttgaagtgtgtgacctgccagtg
agagctgccaagtttgtcgcgaggaagaactgggtgataactggagcagacgacatgcag
attcgcgtcttcaactacaacacgttagagcgcgtgcacatgttcgaggctcattccgac
tacatccgctgcatcgccgtgcatcctactcagccctacatcctcacgagcagtgacgat
atgctcattaagctgtgggactgggagaagaagtggtcgtgcagtcaggtgtttgaaggc
cacacgcactacgtcatgcagatcgtcatcaaccccaaagacaacaaccagtttgcgagc
gcgtcgctcgacagaaccatcaaggtgtggcagctgggttcctcttcccccaacttcact
ctggagggccacgagaaaggagtcaactgcatcgattactacagcggaggagataagccc
tatctcatttcaggagctgacgacagactggtgaagatctgggactaccagaataagacg
tgcgtgcagacgctggagggtcacgcccagaacgtgtcctgcgtcagcttccaccccgag
ctgccaatcatcgttacaggatccgaggacggcaccgtgcgcatctggcactccagcacc
taccggctggaaagcacgctgaactacggcatggagcgggtgtggtgtgtgtgcggcctg
cgcggttccaacaacgtcgcgctcggttacgatgagggcagcattattattaagcttggt
cgcgaggagcctgccatgtccatggacaccaacggtaagataatctgggccaagcattcg
gaggtacagcaggccaacctgaaggccatgggagacaccgagattaaagacggagagaga
ctgccactggctgtcaaagacatgggcagctgtgagatctacccccagactattcaacac
aaccctaacggaaggttcgtggtggtttgtggagatggagagtacatcatctacacagct
atggctctgaggaacaagagctttggttccgctcaggagtttgtttgggcccatgattct
tctgagtatgcaatcagagaaagcaacagcgtggtgaaaatcttcaagaactttaaggag
aagaagtccttcaagcctgacttcggagcggagggtatctacggtggctttctgctgggc
gtcaggtccgtgaacggcttggctttctacgactgggagaacacggagctgattcggcgc
attgaaattcagcccaaacatatcttctggtcagactccggagagctggtgtgcatcgcc
acggaggagtcgttcttcatcttgcgctacctggcggacaaagtggccgcatcacaagag
tccaacgaaggggttaccgaggacggcatcgaggacgctttcgaggtccagggcgagata
caggagattgtgaagacaggtctgtgggtgggagactgcttcatctacaccagctctgtc
aaccggctaaactactttgtgggcggagagatcgtcaccattgctcacctggacaggacc
atgtacctgctgggctacatccctaaagatgaccggctgtacctgggagacaaggagctg
aacatcgtcagctactcgctgctggtgtccgtgttggagtaccagacagccgtcatgcgg
cgcgacttctccatggcggacaaagtgctccccaccattcccaaagagcagaggaccagg
gtggcccacttcctggagaagcagggtttcaaacagcaggcactggccgtgtctactgac
ccagagcacaggtttgagcttgctctacagctcggggagctgaagattggctaccagctc
gccgtagaagccgagtctgaacaaaagtggaagcaactggcagagctggccatcagtaag
tgccagtttggcttggcacaggagtgccttcatcacgcccaggactacggaggcctgctg
ctgctggctacagcctctggcaacgccgcgatggtgagcaaactggctgaaggtgctgaa
cgcgacggcaagaacaacgtcgccttcatgacctacttcttacaggggaagttggaccag
tgtctggaacttctgatcaggaccaatcgcctgccggaggccgccttcctcgctcgcacc
tacctgcccagccaagtgtccagagtggtaaagctgtggagagagagtctgtcaaaagtc
aaccagaaagctggagagtcactggccgaccccactgaatacgagaacctgttccctggg
ctgaaggaggctttcctggctgagcagtacctcagagagacctctctgggcaagagcaga
cctgccactgactaccccctggtcacgcccaatgaggagcggaacgtgctagaagaagcc
agcggttatgaacccaaaaacatccttcccacccacacacagcagaccgctggccctgag
gaggctgcagtagaagcagaagtatcagcagtcagagctgctcctgtagttactccggta
gctagtgtggctcctccacagcctgaacctgctaaaaaagtggaggaagacattacacag
tttagagaaaagactctggaggagctggaggacgacctggacaacctggagctggacgac
atcgacactacagacgtcaacctggacgacgacttcttagacgactga
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integrated database retrieval system
