Pangasianodon hypophthalmus (striped catfish): 113540516
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Entry
113540516 CDS
T05759
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113540516
Transcription factors [BR:
phyp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113540516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
113540516
NCBI-ProteinID:
XP_026792874
LinkDB
All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MMYSMMEHELKPQPGQQNPHPNGQIMSQHGGSGNVPQAAPKSACPPGADPMDKVKRPMNA
FMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAAHMKEYPD
YKYKPRRKSKPPVKKDNSAAKYPPLPGGSLLAAAHAQSGSPRVDSYGWAPAGSYAAVQGD
ALAYQQQLHRYELPLQYAAPMSQTYMNGANSYSPMSYSSSPQQPSPVMSMVKPEAFTHSP
TGATNHHRGAVQGDLRDMISMYIPGGDVGDPTAQRGYPSVQQHYLGSTVPLTHI
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacagcatgatggagcacgaacttaagccccagccgggtcagcagaatcctcac
ccgaacggccaaatcatgtcgcaacacggcggctccggaaacgtgccacaggcggctccg
aaaagcgcgtgcccgcccggcgcagaccccatggacaaggtgaagcggcccatgaacgcg
tttatggtgtggtcccgagctcagaggcgcaagatggcccaggagaacccaaagatgcac
aactcggagatcagcaagcgcctgggcgccgagtggaaactgctgaccgacgccgagaag
cggccgttcatcgacgaggccaagcggctgcgcgccgcgcacatgaaggagtaccccgac
tacaagtacaagcctcggcgcaagagcaagccgccggtgaagaaggacaactctgcggcg
aagtatcctccgctccccggcggcagcctgctggccgcggcgcatgcgcagagtgggagt
ccgcgcgtggacagctacggctgggctccggctggaagctacgcggccgtgcagggtgac
gcgctcgcgtaccagcagcagctgcaccggtacgagctcccgctccagtacgcagccccc
atgtcgcagacctacatgaacggcgccaactcttacagcccaatgtcatacagcagcagt
ccccagcagcccagccctgtaatgtctatggtcaagccagaggccttcactcactcgccc
accggagcaacaaaccaccaccgtggggcagttcaaggtgaccttagggacatgatcagc
atgtacatccctggaggtgatgtaggggaccctacagcacagaggggttacccaagtgtc
cagcagcactatctgggcagtactgtgcccctcacacacatctga
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