Pangasianodon hypophthalmus (striped catfish): 113540597
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Entry
113540597 CDS
T05759
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113540597 (col25a1)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113540597 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113540597
NCBI-ProteinID:
XP_026792969
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MKASEAPNQSRCAAKMESDSSCGGKRHYLKTITGAIPFVFSIASVAFCILLGIQSSDLKN
RMLDLESSNGERLSHPFAEVSIDEFNSMVQERVDEVLAQHSYEHFARIRTAREVSPDCNC
PPGPPGKRGRRGHNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGLPGDPGSPGELGPVGPEGPPG
LKGSTGPPGIPGIDGLKGEVGMPGLDGIPGAKGDKGEQGEKGDMGEEGPKGNVGEKGDAG
SSAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGE
PGPPGKGERGETGPVGPKGAQGEPGTPGLKGSKGDTGDKGDVGLIGPRGPSGEKGDQGTT
EIIDYNGNIQEALQKITTITVTGPPGPPGPIGPQGIKGDQGPPGLPGLDGERGHKGSKGD
MGMPGMSGDKGSVGLPGLPGFNGQKGEKGDTGLPGPQGPSIIGPPGALGPHGPPGPMGPH
GFPGQKGEAGLPGLKGARGEPGHKGDRGPLGLPGASGLDGKPGLRGTDGPIGAPGPAGPK
GDRGEKGVTGEPGPRGPYGLPGAAGTPGLDGFRGFKGEKGEPGQPGLDGLDAPCQLVQYP
LFLSSPVHATILCVHTMALLPHASIA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttcagaagccccaaaccagtccaggtgcgctgcgaaaatggagagcgactcg
agctgcggcggaaagcggcattacctcaaaaccatcaccggtgcgatcccgtttgttttc
tccatcgcttccgtcgccttttgcatcctactggggattcaaagcagtgacctaaagaac
agaatgctcgatttggaaagcagcaatggagagcgcctctcacacccgtttgctgaggtt
tccatagacgagtttaactcaatggtacaggagagagtggacgaggtcctggcacagcac
tcctatgaacattttgcacgcataaggactgcacgtgaagtctcacctgactgcaactgc
ccaccaggcccaccgggaaagcgaggaagaagaggacacaacggtgaacccggaccccct
ggtccaccaggtccgaaaggtgagaagggagatcaaggagaccagggaccgcggatggtc
ttccctaagatcaatcatggctttctttctgctgatcagcagctcattaagcgtcggctc
attaagggtgatcagggtcaagcaggccctccaggacctcctggacctcctggtcctcct
ggtcccaggggacccccaggagacacagggaaggatggtcccaggggagcaccagggcta
ccaggtgacccaggaagcccaggagagcttggccctgtgggacccgagggccctccagga
ctcaaggggtccactgggccacctggcattccaggtatcgacggattgaagggggaggtg
ggtatgcccggattagatggaatccctggtgccaagggtgacaaaggagagcaaggtgaa
aagggtgacatgggagaagaggggccaaagggcaatgttggtgagaagggtgatgcgggg
tcttctgctgctggcattaagggtgaaccaggtgaaccaggacgaagtgggcaaaaggga
gaaccaggacttccagggctgcctggacttcccggaataaagggtgaacctggctttctc
ggcccgcagggtgagccagggctgccaggactacctggaaccaagggagagcgaggagag
ccggggccgccaggaaagggtgaacgtggggagacaggcccagttggaccaaagggagca
caaggggagccaggaacaccgggcctcaaaggatccaagggggacactggagacaaagga
gatgttggacttataggacccagaggtccatctggagagaaaggtgaccagggcacaact
gaaataatcgactacaatggaaacatccaagaagcgcttcagaagataaccactattaca
gtgacgggtccccctgggcctcctggaccaattggaccacagggcattaagggtgatcaa
ggtcctccaggtcttccaggccttgatggagaacggggtcacaagggttcaaaaggagac
atgggaatgccaggaatgtctggtgataagggatctgtaggattgcccgggctaccaggc
ttcaatggtcagaaaggagaaaaaggtgatactggcctgcctggacctcaaggaccatct
attataggccctcctggggcacttggtccacatggtcctcctggtccaatgggcccacat
ggattccctggacaaaagggggaagcaggtttgcctggtttgaagggagcacgcggggag
cccgggcataagggtgaccgtggacccctgggcctccccggagcgtctggcttggatggc
aagccgggactaaggggtacagatggcccaattggtgctcctggtcctgctggtcctaaa
ggagatagaggtgagaaaggtgttacaggtgaacctggaccaagaggaccgtatggatta
cctggtgctgctgggacacctggcttggatggtttccggggctttaagggtgaaaagggt
gagccaggccagcctggtctggatgggctggatgccccgtgccaattggtacagtatcct
cttttcctatcctctcctgtgcatgccaccattctctgtgtccacactatggcattgctc
ccacatgcatccattgcataa
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