Pangasianodon hypophthalmus (striped catfish): 113540879
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Entry
113540879 CDS
T05759
Name
(RefSeq) neural-cadherin-like isoform X1
KO
K27892
neural-cadherin
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113540879
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Cadherin related
113540879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_CELSR2_9th
Ig_Shg
CADH_Y-type_LIR
Cadherin_pro
EGF
hEGF
He_PIG
Y_Y_Y
EGF_2
Laminin_G_3
cEGF
Motif
Other DBs
NCBI-GeneID:
113540879
NCBI-ProteinID:
XP_026793318
LinkDB
All DBs
Position
Unknown
AA seq
2909 aa
AA seq
DB search
MIWAVLISYCMTFVLGNKTDERTPFFHGHVFENSPPGSRVNGLSIPARRIDAQRWCSGSG
SGAYLKLLGDGSDDFRVFAHHGRGHVQLKTASVLDREERAEYVLDVGLCCASCAAAERVV
SRVASVRVDVLDTNDHEPAFRHADVKITLDDATALRSVVYKVAAEDTDSGKNAELIYYAL
PRNGSFYVVPKTGEVLLVDSILGLASPIKFSVFARDRGWPSRTGRHMKVEISPRQWPAAF
PPSSRLLRKSRSVLEPSEPVSVSVSEDAAIGSVIMNLNPVRFQSASFELLYPDTESSPVT
VSRESGELVISRSLDRETEPVVEITVKVQDKRGPDWYLVRVELTVLDVNDNAPEWTMVPF
PYLAVVSPSAAPSTLVYKLTARDGDEGINGEVEYFLSDGGDGRFDVDRKTGHVRTTGLPL
QRDREYVLTVMAADRLGSRSLPAILSVVAGPRAPQFTNASYTISIPENTLEGQPFLVTPA
LSFQKEPISYSLLINPSSLFSIDQESGEISLTRSLDYETDQHRYLLLVRASENKESLSSA
AEVRVIIMDENDCVPEFLQSIYSKEGVPETVTTATSLLQVSASDCDSEQNADITYYTLSS
DFIISPHGTIFPAGALDYERPNHLYEFVVMAVDKGEVPRTGTATVRLRMANVNDEPPEFS
QPVYRTFVSEDAGPNTLVATVLAKDPDGDGIMYKISAGNEEGNFVIDSQKGLIRLRSSPP
PKLQGVEYILNITATDDNASGGPQSLSAMAQVIVGVDDVNNNKPIFEKCQQYKEMASVPE
NKPAGTFVLQVHAVDADEGANGKVTYGFMHKDSMVPAFNIDPETGAITTARKFDRERQRE
YAVTVTATDQAADPLIGICQLNILILDENDNSPKFENLRYEYFLREDTMIGTSFLRVAAH
DDDYSTNAVITYSMSKEQPEYLRVNPVTGWVYVNQPISQRTYITREIIATDGGNRSSSVE
LAVTITNVKNQPPQWEKESYEVVIPENTVRDTPIVTVKATSPLGDPRVTYNLEDGMVPET
NMPVRFYLTPNREDGSASILVAEPLDYETTRNFMLRVRAQNVAAVPLAAFTTVYVNLTDV
NDNVPFFTSSIYEASVTEGVEVGTLVLQVSANDLDLGLNGKISYSLLNDRSGDYQFFRID
PELGSIYTEAVFDRETKGSYLLEVNSMDGWESARPGRHGQPNSDTAYVRIFISDVNDNKP
VFAQTVYEVDVDEDADVGSTILTVSANDEDEGANAKLRYQITAGNTGGVFDVEPEVGTIF
IAQPLDYEQTKRYKLYVLASDGKWEDYTAVVVSVVNKNDEAPVFSVNEYYGSVTEELDGS
PVFVLQVTATDPDKDADQEALRYSLHGQGAESEFIIDEVTGKIYAQRTLDREARAVWRFV
VLATDEGGEGLTGFTDVIISVWDINDNAPIFACAPDNCHGDVAENSPPGTSVMEMTATDL
DDAAVGQNAVLTYRIVGNAALSGGNSGVDMFTINPATGTISLAKAGLDREQTDSYLLLVE
ARDGGGMTGTATAAIHVTDVNDHTPRFLDRSCSARIPESSEPNTALLDLVAEDADAGENG
QLTFSVVSGDPEQKFYMVSHRQEQRGTLRLKKRLDFERPGEQRFNLTIKVEDLDYSSLLH
CTLEVEDCNDHAPVFIPHFLQIPDLREDVLIGTSVASVVASDSDSGLNREISYSIAPESD
PYGLFSVDQTGLVTVAGQLDREITAQHNLIILASDHGTPPLTGTATIHISLLDVNDNGPE
FESAYSPVVWENVPGPQLVHLNTSSTLLRAVDRDSVENGSPFSFTVPPEYRYSNDFYLQD
NRNDTATITALRAFDRERQKEFLLPVIMTDSGKPPKTVTSTLTITIGDKNDHAHVAGEKT
IYLNSHRGRMPTSVLGKVYAPDPDDWDNKTYAFEGHVPNYFILNKRTGFLVIKENAPPGT
YEFQVRVSDGEWPDAVSSVRVHVRELRDEIIYNSASLRLADITAKEFMEQRGGLRSRYEL
LGDFLSEMMSVGVDDVNIFSLIEVRDRTLDVRFSVHSTPFQRAERLHGYLAAHKQKLQSF
LQVNVTQVHVDECVAVDCSGGGGCMNRLSVSERPSVVDSDSMALVSVTLESTAVCSCSAR
EHLHQGCSTYPRNPCHNGGVCVDTQNGYRCQCPAQFDGPECQQTKHSFHGNGYAWFPPIR
PCFESHLSLEFITEVADGLLLYSGPLAPLQPWEPEDFMAIELIDGTPTLKINHGSGTLVL
QLPGNVNVADRRWHRLDVRSNSKDVRFTLDRCAGATVMEMEGVGSWLTTEDHTSCEVTGV
TPNLDRHLNGTQVLQLGGVNENVPYIYPQLQHKHFTGCISNLVVDSKVYDLGSPADSSGS
SPGCSMTDRSCVNMGFPSCGTRGRCHGEWGSFSCQCIAGYSGHQCEQELPEYSFDGRSYV
HYQLSGLLQARHTQVQVLIRTRKHSSSILSLLSAAQNEYIRLEIFQGLLAVFYNLGDGDF
NLTLLSHRLDNGEWHEVHLERHDNEMSLSVDGGGGRREVTGSPGRSREIIIDPSLVMLGN
SFPTGHNKSFQGCMRDLRLNGRSMPLDTQPKDGVLVLSTVGVTLGCSSDSCRRNQCSPPF
TCVDLWRIHECRCPPGHMVKANATGKFCVYTLCASRPCHRGTCVAQSPSKFTCECPEGYR
GRHCEVTLAVYHDDVGLSFRSLFAICICFMALLVLLLGIFLYTRWRSYKGLKEGVYHVSA
HHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQPSPAQSVQYSRSRALHHYHAPI
QQQQHHLHQSDPPSRAPTATSTSSVSSSSTTLRRDVPLNHAPAQGQCAAPAAARTAQLAR
KSLSFSSQDLARYLCEIIRDAEQHADSAPADSLQVFSTEGGGSPAGSLSSFSSAGLDESS
AAGHECLKDWGPRFDKLRALYERAEASDL
NT seq
8730 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggctgttttgatatcctactgcatgacttttgttttgggaaataagacagac
gagcggacgccgtttttccacgggcacgtgtttgagaactccccgccgggctcgcgggtg
aacgggctcagcatcccggcgaggcgcatcgacgcgcagcgctggtgctcgggctcgggc
tcgggcgcgtatctgaagttactcggagacgggagcgatgactttcgggttttcgcgcac
cacggacgcgggcacgtgcagctgaaaaccgccagcgtgttggaccgagaagagcgcgcg
gagtacgtgctggatgtgggcctgtgttgcgcgagctgcgcggcggccgaacgcgtcgtg
tcgcgcgtggcgtccgtgcgggtggacgtcctcgacacgaacgaccacgaacccgctttt
cggcacgcggacgtcaaaataactctagatgatgccactgcgctcaggtcggtggtttac
aaagtggcagcagaggatacagacagcggcaagaacgccgagctcatctattacgcgctg
ccgagaaacgggagcttctacgtggtgcccaagacgggtgaagttctcctcgtggactcc
atcctcggtctcgcgtcgcccataaagttcagcgtgtttgccagagaccgcggatggccg
tcgcgcacaggtcgccacatgaaggtggagatcagtccccggcagtggccggccgccttc
cctccatcctcccgactgctgaggaagtctcgctccgtcctggagcccagcgagcccgtg
agcgtgagtgtgtctgaagacgcagccatcggctctgtgatcatgaacctgaacccggtc
cggtttcagtcggccagtttcgagctgctctaccccgacacggagagctctccggtcact
gtcagcagagagagcggcgagctggtgatctccagaagcctggaccgggagactgaacct
gtagtggagattactgttaaagtgcaggataaaagaggtccagattggtatttggtgaga
gttgagctcacagtcctggatgtcaatgataatgctccagagtggacaatggtacccttc
ccctacctggcagtggtgtctcccagcgcagcccccagcacactcgtctacaagctcaca
gctcgggacggtgatgagggtatcaatggcgaggtggaatacttcctgtctgatggaggt
gatgggcgatttgatgtggacagaaagacgggtcatgtgcggaccacgggtttgcctctg
cagagggacagagaatatgtactgaccgttatggctgctgaccgtctggggagtcgcagt
cttcctgccatcctttctgtggtagcaggacccagagctccacaatttaccaacgcctcc
tacacaatatccatacccgaaaacacactggagggacagccctttctggtcactccggcg
ttgtctttccagaaggagccgatcagctacagcttgcttatcaaccccagcagcctgttc
agcattgatcaggagagtggagagatcagcctgacccgcagtcttgactatgagactgat
cagcaccgctacctgctgctcgtgagagccagcgagaacaaggagagcctgagcagtgct
gcagaggtacgtgtcatcatcatggacgagaatgactgtgttccagagttcctgcagtcc
atttatagcaaagaaggcgtcccagaaacagtaacgacagcaacgtctctgcttcaagtg
tcagccagcgactgtgactcggagcagaatgctgacatcacttactacacactgagctct
gatttcatcatctccccccatggcactatcttcccggcaggcgctctggattacgaacgc
cccaaccatttgtatgagtttgtggtaatggccgtggataagggcgaggtgccacggaca
ggcacagctacggtacgcctgcgtatggccaatgtcaacgatgagcctcccgaattctct
cagccagtatatcgtacttttgtgtctgaagatgctggtcccaacaccttggttgcaacg
gtactggctaaagatccagatggtgacggaatcatgtacaaaatctcagcaggcaatgaa
gaaggcaattttgtcattgacagtcaaaaagggctgatccgccttcgctccagtcctcca
ccaaaattgcagggggtggagtacatcttgaacatcacagccacagatgacaatgcctct
ggaggacctcagtctctatcagccatggcccaggtcattgtgggagtggatgatgtcaac
aacaacaagcccatctttgagaagtgtcagcagtataaggagatggcgtctgttccagaa
aataagccggcaggaacgtttgtgctgcaggtacacgctgtagatgctgatgagggagcc
aatgggaaagtgacgtatggctttatgcacaaagacagcatggttccagccttcaacatc
gatcctgagacaggtgcgatcacgactgcaagaaagtttgatagggagcgacagagggag
tacgcagtgacagtcacggctacggatcaggcagcagatcctctcataggcatctgccaa
ctcaacatcctcatactggatgagaatgacaacagtccgaagtttgagaatctgcgctat
gagtacttcttgagggaagacaccatgattggcaccagtttcctgcgagttgctgcacat
gatgatgactacagcaccaacgcagtcatcacatattccatgtctaaagagcagccagaa
tacctgcgagtcaatcctgtgacaggctgggtttacgtcaaccagcccatctctcagagg
acctacatcaccagagagatcatagccacagatggagggaaccggagtagctctgttgag
ttggctgtcaccatcaccaatgtgaaaaaccaacctcctcaatgggagaaggaaagctat
gaagtggtcataccagagaacactgtcagagacactcccatcgtgacagtgaaagccacc
tctccactgggtgaccccagagtgacctataacctggaagatggcatggtacctgagacc
aacatgcctgtgcgtttctacctgacgcctaaccgagaagacggatcagcctccatcctg
gtggccgagccgctggattatgaaaccacacgcaactttatgctccgagtacgcgctcag
aacgttgccgctgtgcctttagctgcttttacaaccgtgtatgtcaacctaacagatgtg
aacgacaatgttccattcttcacctcctctatttatgaggcctctgtgacagaaggggtc
gaggtcgggactctggtcctgcaagtgtctgccaatgacctcgatctgggtttaaatgga
aagatctcctactctttgctgaacgaccgcagtggagactatcagttcttccgcattgat
ccagaactgggctccatctacaccgaagcagtgttcgaccgggagactaagggttcctat
cttttagaagtgaactctatggacggctgggagtctgccaggccaggaaggcatggacag
cctaactctgacacggcgtatgtgcggattttcatcagtgatgtgaatgataacaagccg
gtgttcgcgcagacggtgtatgaagtcgatgtggatgaggatgcggatgttggctccacc
atcctcaccgttagcgctaatgatgaagatgaaggtgccaatgctaagctgcgctaccag
attaccgcaggtaacacaggcggcgtctttgatgtggagcctgaggtgggcaccatcttt
atcgcccaaccactggactatgagcaaaccaaacgttacaagctgtatgtgttggcctcg
gatgggaagtgggaagactacaccgctgttgttgtcagtgtggtgaataagaatgatgag
gcacctgtgttctctgtcaatgagtactacggcagcgtgacagaggagctggatggttcg
ccagtgttcgtactgcaggtaacagccactgacccagataaggatgctgaccaagaggct
ctacgctactcgctgcatggtcagggagctgaaagtgaattcatcattgatgaggtgaca
gggaagatctatgcccagaggactttggaccgagaggcacgggctgtatggcgctttgtg
gttttagccacagatgagggtggcgaaggcctgactggatttactgatgtcatcattagt
gtgtgggatattaacgacaatgcccccatctttgcctgtgcaccagacaactgtcatgga
gatgtggctgagaactccccacctggcacttcggtcatggagatgactgccactgatttg
gatgatgcagctgtagggcagaatgccgtactaacatatagaattgttggtaatgcagcc
ttgagtggaggcaacagtggggtggatatgtttactatcaacccagctactggaaccatc
tcattggccaaggctggcctggaccgggagcagacagattcatacctcctactggtagag
gccagggacggaggtgggatgacgggtacagccactgctgccatccatgtaacagatgtg
aacgaccacactcctcggttcttggaccggtcttgttcagcacggatccctgagagcagt
gagcccaacactgccctccttgacctggtcgctgaagacgcagatgctggtgagaatggt
cagctgacattcagtgtggtatccggagacccagagcagaagttctacatggtgagtcac
cggcaggagcaacggggaaccctacggctcaagaagcgattggattttgagaggccgggt
gagcaacgcttcaatcttaccattaaggtggaggatctggactattccagcctcctccat
tgtaccttagaggtagaggactgcaatgaccatgctccagtcttcatccctcacttcctg
cagattcctgacctgagagaggatgttttgattggtactagtgttgcttcagtggttgcc
agtgactcagattctggtctgaatcgggagattagctacagtatagcacctgaatctgac
ccatatggtctcttctcagttgatcagactggactggtgactgtggccgggcagctggac
cgcgagattaccgcccagcataacttgatcatccttgcatctgaccacgggactccacca
ttgactggaactgccactattcacatctccctgctggatgtaaatgacaacgggcctgag
tttgagtctgcatactcgcctgtagtgtgggagaatgttccagggccgcagttggtacat
ctcaacaccagctctacgttgcttagagctgttgatcgagactctgtagaaaatggttca
cctttctccttcactgtccctcctgaataccgttacagcaatgacttttacctgcaagat
aacaggaatgacacggccaccatcacagccctcagagcctttgaccgagagagacagaaa
gagttccttctgccagtcatcatgactgacagtggaaaaccacccaaaacagtcaccagt
actctcactatcactatcggtgacaagaatgaccatgcccatgttgctggagagaagaca
atatatcttaacagtcacagagggagaatgccgacatctgttttgggaaaggtgtatgct
ccagatcctgatgactgggacaacaaaacctatgcatttgaaggacatgttcctaattac
ttcatcctgaacaagaggacgggttttctggttataaaagagaatgctccacctggcacc
tatgagttccaggttcgtgtgtcagatggcgagtggccagatgctgtgtccagcgtcaga
gttcacgtacgagagttacgggacgagatcatctacaactctgcctcacttcgtcttgca
gacatcactgcaaaagagttcatggagcagcgagggggtctgcggagcagatacgagttg
ttgggagacttcctctctgagatgatgtctgttggcgtggacgatgttaatatcttcagc
cttatagaagtgcgagacaggaccctggacgtgcgtttctctgtgcacagtacccccttc
cagcgtgccgagagactgcatggatatctcgctgctcataaacagaagttgcagtcattc
ctgcaggtgaacgttacccaggtgcacgtggacgaatgtgtggcggtggactgcagcgga
gggggaggctgtatgaacaggctaagtgtgagcgagaggccctccgtggtggattcagac
agtatggctctggtgtcagtgacactggagtccacggctgtgtgcagctgctcggctcgg
gagcacctgcaccagggctgctccacctaccccaggaacccctgccacaatggaggagtg
tgtgtggatacgcagaatggatacagatgtcagtgtccggcacagtttgatggacctgaa
tgtcagcagaccaagcatagtttccatggcaacggctatgcctggtttcctcccataagg
ccatgttttgagagccacctctctctggagttcatcacggaggtggcagacggtctgctg
ctctacagcggcccgctcgccccattgcaaccctgggaacctgaggatttcatggctata
gagctgatcgacggcactcccaccctgaagataaaccacggctcgggcactctagtcctg
cagttgccgggcaacgtgaatgtggcggacagacggtggcacagactggatgtgaggagc
aatagcaaggatgtgcgcttcacattagaccgctgtgctggagccacagttatggagatg
gagggtgtaggcagctggctgaccaccgaggaccacacttcctgtgaggtgacgggagtc
acaccaaatctggacaggcatctgaatgggacgcaggtgctgcagctgggaggagtgaac
gagaacgtgccctacatctacccccagctccagcacaaacacttcaccggctgcatcagc
aacctcgtcgtcgacagcaaggtgtatgatctgggttctccagctgattcctccgggagc
tctcctggctgctcgatgactgacaggagctgcgtgaacatgggcttcccttcgtgtggc
accaggggtcgttgccatggcgaatggggctcctttagctgccagtgcatagccgggtac
agcgggcatcagtgtgaacaggagcttcctgagtattcctttgatggcaggagctatgtg
cattatcagctgtctgggctgctccaagccagacacacacaggtgcaggttttgatccga
actcgcaaacacagcagctccatcctcagcctgctctctgcagcacagaatgagtacatc
cgactggagatatttcagggcttgttagctgtcttctacaacctcggagatggagacttc
aacctgacactgctctcgcatcgcctggacaacggtgagtggcacgaagttcacctggag
cgccacgataatgagatgtctctgagtgtagatggcggcggtggacgaagagaggtcaca
gggtcacctggacgcagccgggagatcatcattgacccctccttggtcatgctgggaaac
tcgttcccaactggacacaacaagagcttccaaggttgcatgcgcgacttgaggctaaac
ggccgctccatgcctttggacactcagcccaaagatggtgtgttagtgcttagcactgtg
ggagtgacactgggctgctcctcagactcctgcaggaggaatcaatgtagccctccattc
acctgcgtcgacctgtggaggatccacgagtgcaggtgtccaccgggtcacatggtcaag
gccaacgctacaggcaaattctgtgtgtacaccctgtgtgccagccggccgtgccatcgg
ggcacctgtgtggcccagtcaccctccaaattcacatgcgagtgtccagagggctacagg
gggcgccactgtgaggtcacactggccgtctatcatgacgacgtgggcctgagcttcaga
tcgctctttgccatatgcatctgcttcatggcactgctagttctcctgctggggatcttt
ctgtatacacgctggcggagctacaagggcctgaaggagggcgtgtaccacgtttctgct
caccacgatggctgggaggacatccgggagaacgtgctgaactatgacgaggaaggaggg
ggcgaggaagatcagaatgcttatgacatggcagaactgcagaagtccctgcagccaagt
ccggcccagtctgtgcagtacagtcgctctcgagcccttcatcattatcacgcccccatc
caacagcaacaacaccacctccaccagtcggacccaccatcccgagctccaacagctact
agcacttcctctgtgtcgtccagcagtactaccctacgcagagacgtgcccctgaaccac
gctcctgcccagggccagtgcgccgcccccgcagccgcccgcactgcccagctcgcccgc
aagagcttgtccttctccagccaggacctagcacgctacttgtgcgagatcatccgagat
gccgagcaacacgcagactctgcgcccgctgactcgcttcaggtgttctctactgaaggc
ggaggttctccagctggttcactcagctccttcagctcagctggtctggatgagagcagc
gctgctggacacgagtgcctcaaagattgggggccgcggttcgataaactccgagcactt
tatgagagggcggaggctagcgacctctaa
DBGET
integrated database retrieval system
