Pangasianodon hypophthalmus (striped catfish): 113540959
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Entry
113540959 CDS
T05759
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
phyp00535
]
113540959
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113540959
04091 Lectins [BR:
phyp04091
]
113540959
Proteoglycans [BR:
phyp00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
113540959
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
113540959
Lectins [BR:
phyp04091
]
C-Type lectins
Lecticans
113540959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
EGF_TEN
hEGF
Motif
Other DBs
NCBI-GeneID:
113540959
NCBI-ProteinID:
XP_026793464
LinkDB
All DBs
Position
Unknown
AA seq
1570 aa
AA seq
DB search
MTSLLLLCLCLRLISAKWINTDYLYTEPERTLSVSIPIAQTLQPLMGDTLVLPCYFRDDT
VPDPGAPTIAPLSHRIKWSITTKEKTTDILVASEGIVAVNKKYTDRVQMVAYPTSTTDAT
IKITQLLSNESGVYRCEVMHGIEDSHDTVNVQVQGIVFHYRAITSRYTLTFEKAQAACIQ
NSAVIATPVQLQAAYDTGYHQCDAGWLSDQTVRYPIHDPREACYGDKYEFPGVRTYGVRD
ANETYDVYCFAEKMSGRVFYSTHPEKFSFAEAQAQCAKLGSKLATTGQLYLAWQAGMDEC
NAGWLADGSVRYPINIARPQCGGGLLGVRTVYRFINQTGYPLPESRYDAICYTDDEEEGS
AIPNIFPDIQTTETTSEVVNVEMVTGSPPVLITQTSTESELIGEVETHKPPTTTADFLYV
EQNVTLLPLSSPPSIIDDFVKVVTAQPDLGVEIPGENATAPVMSLTGVVFHYRLGHSRYA
FTFVEAQLACQDIGAVIASPQQLQAAYEAGYHQCDAGWLIDQTVRYPIVSARKKCAGDLE
DFPGVRSYGVRPASEHYDVYCYMDKPRGNVFHVSSFEGFTYDEAMAYCQAQNASLASTAD
LYVAWKQGFDKCRAGWLIDHSVRYPINNPSPQCGGGKPGVHTVFKFPNQTEYPDVHSKFD
AYCLEVDLQLYLNETESNMTLIEEELVNLTSRTDLFMPVNPTITPPIPVEVSGSGSADLP
SVASGFSGDGSASGSGEHPRGTSHKEGELSGSGLPSGSSGLGGELSGSGLPSGSSGLGGE
LSGSGLPSGSSGLGGEISGSGLPSESSGLGGELSGSGLPSESSGLGGELSGSGLPSESSG
LGGELSGSGLSSGSSGLEGELSGSGLSSESSGLGGELSGSGLSSGSSGIGGDYSGSGVSG
DMSGSGFTDDGSGISVTFSGIDTIFSGEGSASGTLQEAGEGSAEILMFMSGLGSGFFSGD
RSGSGSGSSFVSAESGSTSDFFSDLRESGSGEPSGISSGLGSSGDFSGFRGFPSGLISSG
EDSGFSGLSGSGIIMVKGQWVEVSTAPTLTAQELGGSQIHFSGSGDLQGSGLSGSGVSGS
GDLSGSGSGSGFPAITFLDSGLTDLIDLSSREQEASGTLIYGSGEGSGDLSGDSGLPSGD
TSGASASGNIITFTDESFVEVSFRSTQNRELRKGPIEHSGRESGPFLSSGHHHTTISSED
HHPKSLLSEDPVHSIDEPTVIVPSELFSNSARPQEILPNTAQTFWKYDSVTQASTAGTTT
DPAFSMQTPTVIEVPAMEKPAVDPCNPNPCGAAACSVQDGVGVCHCPPGMKEEECHVEVD
VCHSNPCANGATCVEVQDAFKCLCLPSYGGDHCEIDIETCEEGWIKFQGNCYWHFSKRTV
WEEAEQHCRSLGAHLVSITNQEEQVFVNSHAQDYQWIGLNDKTFENDFQWTDGSPMQYEN
WRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKTGPVTCGQPTELRNARWFG
TKKERYQVNSIIRYQCNDGFQQRHPPVVRCMADGHWQEPQVECIPQIKRRLQKRSIRRRS
AKRTSLRKHL
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgacatcactgctgttactgtgtttgtgtcttcggttaatctcagcgaaatggatcaat
acagactacttatatacggaaccagaaagaactctgagtgttagcattcccattgctcaa
actctccaacccttaatgggagacacactggttctgccctgctatttccgggatgacaca
gtgcctgacccaggtgctcccaccatagcccccttgtcccatcgcatcaaatggagcatc
accaccaaagagaagaccacagacattttggtggccagtgagggtatcgtggcagtgaat
aagaagtacacagacagggttcaaatggtggcataccccaccagcaccactgatgccacc
attaaaatcacacagcttctttcaaatgagtctggagtgtatcgctgtgaagtcatgcat
ggaatcgaagacagccatgatactgtcaatgtccaggtgcaaggcattgtgttccactac
cgtgccattacttcacgttacacactgacgtttgagaaggcacaggcagcctgtattcag
aatagtgctgtgatcgccacaccagtgcagctacaggcagcgtatgatacagggtaccac
cagtgtgatgcaggctggctttctgaccagactgttaggtatcctatccatgatccccga
gaggcctgctatggtgacaagtatgaattcccaggagtgagaacgtatggagtaagagat
gcaaacgagacctatgatgtgtattgctttgctgagaagatgtcagggagggtgttctat
tcaacacaccctgaaaagttttcctttgctgaagctcaggcccagtgtgctaagctgggg
tctaaattagccacaactggccagctctacctggcctggcaggctggtatggatgaatgt
aatgcaggctggctggcagatgggagtgtacgctatcccatcaacattgcccgaccccag
tgtggaggaggtctgctgggagtgcgcactgtgtaccgcttcattaatcagacaggctac
cctctaccagaatcaagatatgacgctatctgttacacagatgacgaggaagagggctca
gccatacccaacatcttcccagatatacagactacagagactacaagtgaggtagtaaat
gtggaaatggtgacaggcagcccaccagttttaattacgcagacctccactgagagtgaa
ctaataggagaggttgaaacccacaaaccccccaccaccactgctgacttcctgtatgtg
gagcagaatgtcacactactgcctctgtcttcaccacccagtatcattgacgattttgta
aaagtggtgactgcacagcctgaccttggagtagagattcctggtgaaaatgcaactgca
cctgtgatgtctcttactggcgttgtcttccactacagactaggtcacagtcgatacgct
tttacctttgttgaggctcagctagcctgtcaggacattggtgcagtgattgctagtcct
cagcagttacaggctgcctatgaagctggttatcaccagtgtgatgcaggctggctgatt
gaccagacagtgaggtatcctatcgtatctgcacgaaagaaatgtgctggtgatttggaa
gatttccccggtgtgaggtcttatggtgtacgacctgccagtgagcactatgatgtatac
tgctacatggacaaaccaagagggaatgtttttcatgtgagttcatttgagggtttcaca
tatgatgaagcaatggcttattgccaggcccagaatgcctccttggcctccacagctgat
ctgtatgtggcctggaagcaaggttttgataagtgtcgtgctggctggctcatcgaccac
agtgtccgctatcccattaataatcctagtcctcagtgtggaggagggaaacctggagtc
catacagtctttaagtttcccaaccagactgaatatcctgatgtgcactccaaatttgat
gcctactgcttggaagttgatctccaattatatcttaatgagactgaatcgaacatgaca
cttattgaagaggaattggtgaacctgacctcaagaactgacctttttatgcctgtgaac
cccactattactcctcccattcccgtggaagtctctggttctggctcagcagacctgcca
tctgtggccagtggtttttctggtgatggatcagctagtggaagtggggagcatcctagg
gggacatcacataaagaaggagaactttcaggatctggactgcctagtgggtcttcaggt
ttaggaggagaactttcaggatctggactgccaagtgggtcttcaggtttaggaggagaa
ctttcaggatctggactgccaagtgggtcttcaggtttaggaggagaaatttcaggatct
ggactgccaagtgagtcttcaggtttaggaggagaactttcaggatctggactgccaagt
gagtcttcaggtttaggaggagaactttcaggatctggtctgccaagtgagtcttcaggt
ttaggaggagaactttcaggatctggactgtcaagtgggtcatcaggtttagaaggagaa
ctttcaggatctggactgtcaagtgagtcttcaggtttaggaggagaactttcaggatct
ggactgtcaagtgggtcatcagggataggaggtgactattcaggatctggagtaagtgga
gacatgtctggctcaggctttactgatgatggctcaggcataagtgtgaccttctcagga
attgacacaatattctctggggaaggatcagcttcaggaacacttcaggaagctggggag
ggcagtgcagagatcctcatgttcatgtcaggtctgggttctggcttcttcagtggggat
aggtctggatcaggaagtggctcaagttttgtttcagcagagagtggatctacatcagac
tttttcagcgacttgagagagagtggaagtggagaaccttctggcatttcttcaggtctt
ggttctagcggggatttctctggattcaggggttttccatcaggcttgatttcctctgga
gaggacagtggtttctctgggcttagtggcagtggaataatcatggtcaaaggccagtgg
gtggaagtgtccactgctccaaccctcacagctcaggagctgggtggaagtcagatacat
ttcagtggatctggagatctacaagggtctggtttgagtggctctggtgtgagtggaagt
ggtgatttaagcggctctggaagtggttcaggatttcctgccatcacctttttggactca
ggccttactgatctcatagatctatccagcagagaacaagaggcctctgggacattgata
tatggatcaggggaagggagtggtgacctctctggagactctggtcttccatcaggagac
acatcaggggcatcagccagtgggaatattataacatttactgatgagagctttgtggaa
gtttcttttaggtccactcaaaaccgggagctcagaaaaggaccaatagagcacagtggg
agggagagtggaccatttttgagcagtgggcaccaccatactactatttcaagtgaagat
caccatcccaaatccctccttagtgaagacccagttcattcaattgatgagccaacagtt
atagttccctcagagctgtttagtaacagtgcacggccacaggaaatcttgccaaacact
gctcaaaccttctggaaatatgattctgtgactcaagcatctacggctggcaccactacc
gaccctgccttttcgatgcagaccccaactgtcatagaggtcccagccatggagaaacct
gctgtggacccatgtaacccaaacccctgtggtgctgctgcatgttctgtgcaggatggg
gttggcgtgtgtcactgcccacctgggatgaaggaggaagagtgccatgttgaggttgat
gtgtgccattcaaacccttgtgccaatggagctacgtgtgtggaggtacaagatgctttc
aaatgcttatgcctgcccagctatggaggggatcactgtgagatcgacatagaaacatgt
gaggagggctggattaagtttcagggtaactgttactggcacttctcgaagagaacagtg
tgggaggaggctgaacaacactgtcgaagccttggagctcacctggtcagcatcaccaac
caagaagagcaagtattcgttaactcccatgcacaggattaccagtggattggactaaat
gataagacttttgaaaatgacttccagtggacagatggaagcccaatgcaatatgagaac
tggaggcctaatcagccagataactatttcaactctggcgaggattgtgtggtgatgatc
tggcatgaaaatgggcagtggaatgatgtgccttgcaactatcatctaccattcacatgc
aaaactggccctgtcacatgtggccagcctactgaactgaggaatgccaggtggtttggg
actaagaaggaacgctatcaggtcaactcaataatcagatatcagtgcaatgatggcttc
caacagcgccatccacctgtggtccgctgcatggcagatggacactggcaggagccacag
gtggaatgcataccccaaatcaaaagaagactacagaagagatccattaggcgtcgatct
gcaaagaggacatcattgaggaagcacctctaa
DBGET
integrated database retrieval system
