Pangasianodon hypophthalmus (striped catfish): 113541005
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Entry
113541005 CDS
T05759
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
113541005
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
phyp04040
]
113541005
Ion channels [BR:
phyp04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
113541005
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Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
113541005
NCBI-ProteinID:
XP_026793558
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MLAVADRNLSRGGDGSSRMTNNINYNKNSDSSVSISRMDVIIPFSPDVPCDSNGQRMWWA
FLASSMVTFFGGLFIILLWRTLKYLWTVCCHCSIKNKEAQKVNNGQADGPLKSQDEKDDA
PASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQNFYK
DFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGL
RFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENF
QNSQPLSYWECVYLLMVTMSTVGYGDVCAKTTLGRLFMVFFILGGLILLSKVMFGFLMTT
LFKLQARSCFISFCAAKLNFPLCRHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLH
NISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDAS
NIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCL
AQGLSTMLANLFSMRSYIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYV
KLKLLLIAIEYKSEQRESSILINPGNHVKMQEGTLGFFIASDAKEVKRAYFYCKACHDDI
TDPKRIKKCGCKRLIYSKMSVYKRMKLACCFDCGRSERDCSCMAGSVHSNMDSLQRAFPL
SSVSVHDCSTSLRASKYKYNGYVTSPADGATTPGKTGGQREAGVRFKAEWILVEDEHPST
LSPKKKQRNGGMRNSPNCSPKVMRHDPLLIPGNEQIENMDVNVKRYDSTGMFHWCPSKDI
EKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKHIVFVGSL
DYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNKIDDASLQDKEC
ILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGLVRQASVTTGSNIPIIT
ELAKPGKLLPLVPFSQEKNSGTNIQMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACG
TAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALLAEENALRGGYSTPQTLANR
DRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRY
VITNPPYEFELVPTDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKSSSVHSIPTTNRT
NRSSKTRESRDKHNATRMNRMSQEKKWFTDEPENAYPRNIQIKPMSTHMANQVNQYKSTS
SLIPPIREVEDEC
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgtggcagatcgcaacctttcccgcggcggcgacggcagctctagaatgact
aataatatcaactacaataaaaactcggactcttctgtctccatatccaggatggatgtg
atcatcccgttctccccagacgtgccgtgcgatagcaatggccagcgcatgtggtgggct
ttcctcgcctcgtccatggtgacgttcttcgggggtctctttatcatcctcctgtggagg
accctcaagtacctgtggactgtctgctgccattgtagcatcaaaaacaaggaggcccag
aaagtgaataacgggcaggcagatgggccactgaagagccaggatgagaaggatgatgcg
ccagctagtgaggtgggctggatgacctcagtaaaagactgggccggagtcatgatctca
gcacagactctcacaggcagagtactggtggtgttagtctttgctctcagtatcggagcc
cttggaatatacttcatagactcgtctgaccctatagaatcctgtcagaatttctataaa
gacttcaccttacagatcgacatggccttcaatgtgttcttcttactctactttggcctg
cgttttattgcagcaaacgataagctgtggttctggctggaggtgaactctgtggtggat
ttctttactgtgccaccggtgtttgtgtctgtgtatcttaacaggagctggctgggtctg
agatttctaagagccttgagactgatacagttctcagaaattttacagtttttgaatatc
ttaaaaacaagtaattccatcaagctggtgaacctgtgttccatcttcataagcacatgg
ctcacagctgcaggattcattcatctggtggaaaactcaggggatccttgggaaaacttc
caaaattctcaaccactttcatattgggaatgtgtgtacttactcatggtcactatgtct
acggtgggatacggggacgtctgtgcgaaaaccacccttggccgacttttcatggtcttc
ttcattcttggcggtttgatattgttgtcaaaagtaatgtttggatttttaatgactaca
ctctttaaactacaggctagaagttgttttatctcattttgtgctgctaagctgaatttt
cccctttgcaggcatattgtggtctgtggtcatatcacactcgaaagtgtatccaacttc
cttaaagacttcctacacaaggacagggatgatgtcaatgtagaaattgtttttcttcat
aatatttcccctaatcttgagctggaagccttgttcaaacgtcacttcactcaggtggaa
ttctaccaaggatctgttcttaacccacatgatctagctagagtcaagattgagtcagcg
gatgcatgcttaattctcgccaacaaatactgtgcagacccagatgctgaagatgcatcg
aatataatgagagtaatatccatcaagaattaccatccaaagataagaataatcactcag
atgttgcagtaccacaacaaggcccatctgctaaacattcccagctggaactggaaggag
ggcgatgatgcgatctgcctggccgagctgaaggcgggctttatagcccagagctgcctg
gcacagggcctgtccaccatgcttgccaacctgttctccatgaggtcatacatcaagatc
gaagaggacacatggcagaagtattatctggagggagtggccaatgagatgtacactgag
tacctgtccagtgcctttgtgggcctttcttttcctacagtttgtgagctgtgttatgtg
aagctcaaattgttgttgatcgctattgaatacaagtcagagcagagggaaagcagtatt
ctgatcaaccctgggaaccatgtaaagatgcaggagggaaccttgggattctttattgcc
agtgatgccaaagaggtcaaaagagcatatttctactgcaaagcttgtcatgatgacatc
acagatcccaaaaggatcaaaaagtgtggctgcaagagactgatatattccaagatgtcc
gtctacaagcgaatgaaactggcatgttgttttgattgcgggcgctctgagcgcgactgc
tcgtgcatggcaggcagtgtacatagtaacatggacagccttcagagggccttcccactt
tcttctgtctctgttcatgattgctcaaccagtttacgtgcctccaaatataagtataac
ggatatgttacatcaccagcagatggcgctacaactccagggaaaacaggaggtcagaga
gaggctggggttcggttcaaagcagaatggattttagttgaagacgagcatccatcaacg
ctgtcacccaaaaagaagcagcgcaacggaggcatgcgaaattcacccaactgctcaccc
aaagtgatgagacatgaccctttacttattccaggaaatgagcagattgagaatatggac
gttaatgtgaagagatacgactccactggaatgtttcactggtgtccttctaaagacatt
gagaaagtcattctgacgaggagtgaggcctccatgacggttctgagtggacatgtcgtg
gtctgtatatttggagatgtcacttctgctttagtggggctgcgaaacttggtgatgcct
ttaagagcgagtaacttccattaccatgagctgaagcacatagtgtttgtaggctcactg
gattatctgaggagggaatgggaaacccttcataacttccccaaggtctccatcttaccc
ggcacaccattaagtcgagctgatttaagggctgtaaacatcaacctctgcgacatgtgc
gttatcctgtcagccaatcagaacaaaattgacgatgcttcactgcaggacaaggaatgc
atcttggcatcactcaacatcaaatctatgcagtttgatgacagcattggggtcttgcag
gctaattcccaaggttttacacctccgggaatggacagatcgtctccagacaacagtcca
gtgcatgggttggttcgccaagcatccgtcaccactggctccaacatcccaatcataact
gagctagctaagcctggcaaactactgcctttggttccattcagtcaggaaaaaaacagt
ggaaccaacatacaaatgataacagaactggtgaatgattcaaacgttcagttcctggac
caagatgatgatgatgacccggatacagagctgtatctgacccaaccctttgcctgtggg
acagcttttgctgtcagtgtgctcgactctcttatgagcgctacgtacttcaacgataat
atcctgactctgatccggacgctggtgacaggaggggccacgccggagctggaggcgctg
ttggccgaggagaatgcactgcgcggaggatatagcacgccgcagacgctagctaacagg
gacaggtgtcgcgtggcacagctcgccctctacgatggcccttttgcagacttgggggat
ggtggttgttatggggacttgttttgtaaagcattaaaaacctacaacatgctgtgcttt
ggaatctatagattaagagatgcacacctaagtacgccgagccagtgcacaaaaagatat
gtgatcaccaacccaccctacgagtttgagctcgtccccacagacctgatcttctgcctg
atgcagtttgaccacaacgcaggtcagtcgcgaaccagcctgtcccattcgtcccattcc
tcacactcatctagcaagaagagctcctcagttcactctatccctaccaccaaccggacc
aaccgcagcagcaagacccgcgaaagccgcgacaaacacaatgcaacaaggatgaataga
atgagccaagaaaagaaatggtttacagatgaaccagaaaatgcctacccaaggaacatt
caaatcaagcccatgagcactcacatggccaatcaagtcaatcagtacaaatccactagc
agcctgattccaccaatcagagaagttgaagatgaatgctga
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