Pangasianodon hypophthalmus (striped catfish): 113541131
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Entry
113541131 CDS
T05759
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113541131 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113541131 (topbp1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113541131 (topbp1)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113541131 (topbp1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113541131 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
113541131
NCBI-ProteinID:
XP_026793726
LinkDB
All DBs
Position
Unknown
AA seq
1527 aa
AA seq
DB search
MSKASQDAYMVKFVEHNGHKSELALRAYEAIVELQSEKYVQTVDEEAVLELEHNDKSLYV
FSDFTSNAFEHCRKVGCRIVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTVSCTSLDKE
ARTEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPVLLPTWVRACWEKS
QDCLFRYSDLRLEDYQCPVLKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVYCVSIHWLFDSIEKGFCQDESRYAVEQEDKRKEKSGRPNTS
TPTGSNKTDGPSLLGLSHISNVSMNVNDTAMTTATMSRIEAADPIDTFDATICPADDLLD
GCKLYLCGMVGKRLEKLRRLVNSAGGLHFNQLGEELTHIVMGEPDQDVKSFLAKVSHRPH
IITVQWLLDSFSRGSLLPVESYFHPSFLPPASAQVDIPAPRPAASRPSRPSFATPPAPSP
NRHARAEEELLSQYVDNNQTVVELPPPPDNKNKTCRSELLDPAAPGHDSTVAESTEGGLF
TGKRFLLVGFGAEAEAQLSMLVVENSGKVLVGRFRGVADYAIVPLLGCEVEATVDEVVTD
TWLAMCVEQQCTLPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFTGAERESLIQLARHLGS
SVQDYFVRTANPRKGMLASTHLVLQTPDGTKYQAAQKWGLPAVTIHWILESGRTGKRAEE
KRYLVDLPPSPERSEDSFIGASQKAAGPPVPVRLSPEIPLLGPQSSASVTPLDVGRLQSR
TVQSVLRKMKNGEEGEVDVTTPAQEESRGSLQKELQLDTPSRFLSRDRLFGPSFNVKDVF
DHLKTPGNKPQQGEGAETPLSEVIERNLKAAVANSNRGHVMSLAALTASPQLGKEPESRI
HEQVEEKTPTPLAGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHYIYQGKVGD
NTKEYRAVKERGLHIVSQHWLQACAEEQKRVPESLYPFTFNPKMSLTLSQVTDSTQKSPP
LSKHRSKLRARNEDDDTEMGAVDITADISTPQREPREREQQQPTSSERKDLTETLEMREN
LQRQLQEIMSATKLTSGRRASSRLARVGSGGLDSPHTPEILGRMGRRSRTLEALRMSRQA
AADVNTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAVLPPPHTDQNARDT
MTDSELVEMAACDVIEEHMKRTVTPPRVNTEPQAPKMPEAPATDSPISKASMLAELQLDE
EEEREKVVVKKEPPRFQLSSLNPQERIDYSHLIEELGGVLLEKQCFDPSCTHIIVGYPLR
NEKYLAAMAAGKWILHRSYLEACRAEGHFIPEEDYEWGSRSILDALPSINSQQKRLALAA
LRWRKSLQGRTDKEGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPSLYKETTHL
FADFSRLGPNDVRVDVTEAMAYGVKCLRPEYIADYLMQEPSPPMDAYYLPGAAANGLPEN
SDQCQNTPSRKRKASGDTSAVKKSRVR
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagcgagccaggatgcgtacatggtgaaatttgttgaacataatggacataaa
agtgagcttgccctcagagcttatgaggcgatagtggagctgcagtctgagaaatatgtg
cagactgttgatgaagaagctgtgctggagctggagcacaacgacaagtccttgtacgtg
ttcagcgatttcactagcaatgcatttgagcactgcaggaaggtggggtgcaggatagtg
agtcctctggtagtgctgttctgcctgcagcagcagagatgtgtaccgaaggcggagcag
ccagtttacaacatggccatggctgatgttacagtgtcctgcaccagtctggacaaagaa
gcacggacagaagtgatggacttggttcagttgatgggtgggcgggtctaccgagacctc
aacgtgtctgtcactcacctggtggcaggtgaggtgggcagtaaaaagtacctggtggca
gccagcctggggaagcccgtccttctgccaacctgggtcagagcatgctgggagaaatct
caagactgcttgttccggtactcagacctgcgtttggaggattaccagtgtcctgttctc
aaaggctgcactgtgtgtgtgactggtctgtccacggtggaacgtaaggaggtgcagagg
ctgtgtgaactgcatggtgggagctacacaggccagctcaagatgaatgaatgcactcat
ctcattgtcagcgaaccctcaggtcaaaagtatgagtttgcgaagaagtggaacgtgtac
tgcgtctccattcactggctctttgacagtattgagaagggcttctgtcaggatgaaagt
cgttatgccgtagagcaagaggacaagaggaaggagaagtctggcagacccaacacctcc
actcccactggctcaaataagacagatggaccatctttgcttggactgagccatatctca
aatgtcagcatgaatgtcaacgatacagccatgacaactgcaacaatgagccgcatagag
gctgctgatccaattgacacatttgatgctaccatctgtccagcagacgacttattagat
ggctgtaagctgtacctgtgtggaatggtggggaagaggttggagaagctgcgtcggttg
gtgaactctgcaggaggcctgcacttcaaccagcttggtgaagaacttacacacatcgtg
atgggagaaccagaccaggatgtcaaaagctttctcgctaaagtctctcataggccacac
atcatcacagtgcagtggttgctggacagtttctctcgtggctctctgcttccagtggag
agctacttccacccctcattcctccctcctgcttcagcccaagtggacattcctgccccc
cgccctgctgcctcacgcccctccaggccatcttttgctacacccccagcccccagccct
aaccgacatgccagagctgaggaagagttactctcgcaatacgtggacaataaccagaca
gtagtggagttacccccacctccagataacaaaaacaagacttgcaggtctgaactacta
gacccagctgcaccagggcatgactccactgtagctgaatccacagagggaggtttgttt
actgggaaacgcttcctcctggtgggcttcggtgcagaagcagaggcacagctctcgatg
ttggttgtggagaacagtggaaaggttttggttggccgtttcagaggtgtggccgattat
gccatagttcctctgctgggctgtgaggtggaggccacagtggatgaagtggtcacagac
acctggctggcaatgtgtgtggagcagcagtgtactctgccagtgtcctctcatccattg
ttcaccccagttgtggtgaaggagggttgctctcctctcagagactgtgtgctgtcagtt
agccagtttaccggagcagagagagagtcactcattcagcttgccagacatctgggatca
agtgtccaggactattttgtgcgcactgctaatccgaggaaaggcatgctggctagcact
caccttgtcctgcagactcctgacggcactaagtaccaggcagcacagaagtgggggctg
cctgctgtgacgatacactggatcctagagtccggcagaacgggcaaacgtgctgaggag
aagcgctatctcgtggatctgccgccatctcctgagcgcagcgaggacagtttcattgga
gcgtctcagaaagctgcaggccctcccgtgcctgtgcgtctctctccagagattcctctg
ctaggtccacagagcagcgcctctgtaacaccgttggacgtgggccgtctgcagagccgc
actgtccaatccgtcctgcgcaaaatgaaaaatggtgaggagggagaggtggatgtcaca
accccagctcaagaggaaagcagagggagcttgcagaaagagctacagcttgacacgccg
tctcgcttcctcagtagagacaggctttttggaccttcctttaacgttaaggatgtgttt
gatcatttaaaaacgcctggtaataagcctcagcagggtgagggggcagagactccccta
agtgaggtgatcgaaaggaatttaaaggcagctgtggccaatagcaaccgcggtcatgtc
atgagccttgctgccctgactgcaagtcctcaactgggcaaagagccagaatctagaata
catgaacaggtagaggaaaagactccaactccacttgccggagtggtggtttgtgtgagt
aagaaactcagtaaaaaacagagtgagctaaatgcagtggctgcgtccctaggagcagac
ttcaggtggtcttgtgatgattcggtcacccactatatctaccagggcaaagtgggagac
aacactaaagagtacagggcagtgaaggaaagaggcctgcacatagtgtcgcagcactgg
ttgcaggcgtgtgcagaggaacagaaacgagtgcctgagtcactctaccctttcaccttt
aaccccaaaatgagcctgacgttgagccaggtgacagacagcacccagaaatctcctccc
ctgtccaaacaccgctctaaactccgagcgcgaaatgaagatgatgacacagagatgggg
gctgtggacatcacagcagatatttctactcctcagagagaacctagagagagagagcag
cagcaaccgaccagcagtgaaaggaaagacctgacagagactctagagatgagagagaat
ttgcagaggcagctacaggagattatgtctgccacgaagctgaccagtggccggcgagcc
tcctctagattggcccgagtgggttcaggtggtctagactccccacacactccagagatt
ctgggccgaatgggcagacgcagcagaacactggaggccttacgcatgtcccgtcaggct
gcagcagatgtgaacacggaagcgtctcagagtgagcagatagtgtgggacgaccccacg
gcgagagaggagagggcgaagctagctgataacctgcagtggccaggcagcccttctcag
cattcagagcctctcgccgtcctgcctccaccacacactgatcaaaacgcccgagacacc
atgaccgactctgaactggtggagatggctgcctgtgatgtaatagaggagcacatgaaa
aggacggtgaccccaccaagggttaacactgagcctcaggctcccaaaatgcctgaagct
cctgctactgattctcccatctccaaagcttcaatgctagctgagctacagcttgatgaa
gaggaggagagggaaaaggtggtggtgaagaaggagcctccacgcttccagctgtcttct
cttaacccacaggagcgcattgattacagtcacctcatagaagagctgggtggtgtctta
ctagaaaagcagtgttttgaccctagctgtactcacatcattgtgggttatcctctgagg
aatgagaaatacctggctgccatggcagctggcaaatggatccttcaccgctcatacctg
gaggcctgtcgtgctgagggacacttcataccagaggaggattatgaatggggtagccgc
tctattctggatgctcttccctccataaactcccaacagaagagactggcactagcagcc
ttgcgatggagaaaatcattgcagggtcgcacagataaagagggtgcgtttggaggctgg
acagtgatgttgaatatagaccaggccagagatgcaggattcagaagattgctgcagtct
ggaggagcaaaggtattgccaagcccatctccctctctgtataaggaaaccactcatctc
ttcgcagacttcagccggctgggaccaaatgatgtcagagtggatgtgactgaggccatg
gcttatggagttaaatgcctcaggcctgagtacattgctgattacctcatgcaggaaccc
tcaccaccaatggatgcatattatcttcccggagcagcggcgaacgggcttcctgaaaac
tcggaccaatgccagaacaccccctcacgcaagcgcaaggcctcgggggacacatccgct
gtgaagaagagcagagttaggtga
DBGET
integrated database retrieval system
