Pangasianodon hypophthalmus (striped catfish): 113541148
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Entry
113541148 CDS
T05759
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113541148 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113541148 (pan3)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113541148 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
113541148 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
113541148
NCBI-ProteinID:
XP_026793755
LinkDB
All DBs
Position
Unknown
AA seq
806 aa
AA seq
DB search
MNSGLPVSAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDDCQFLHEDPSAASAVHGGGGGG
GSGSPVTLALAGGAVSTAAAVAGYPLAGNAVAACPSGGPAGVAKKSDALGPAGAALDGQL
LSIAGMDGGALSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSPSLLNDGAK
NFSHSAHDPVSSPTSSLFSDFGALSITQRRKAPNPAATEFIPKGAPRMSTMSQAAVPTFP
SPLFPHPSLSGSAAAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMVP
TTASEQGGGAHIIQKETVGGTTYFYTDNTPAPMTGMVFPTYHIYPQTAPHVAYMQPKANA
PSFFMADELRQELINRHLITMAQIDQSENPGVPSEVDSYHSLFPLEPLLPPNRLQKTSNF
SYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAF
GDHSLVFSYDFHAGAETMYSRHFNDPTADSYFTKRKWGPHEPPPPRQHAGLLPESLIWAY
IVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQ
YQQADLISLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRS
VNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPT
WSETGDRYLLKLFRDHLFHQVTEAGTPWVDLSHIVSCLNKLDAGVPEKISLVSRDEKSVL
VVTYSDLKRCFDSTFQELLAAANGSL
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtggactcccggtctcggctgctccgctcggcggtgtcggaataccgggcgtc
aaggtgaaattctgccgctattacgcgaaagacaagacttgcttttatggcgacgattgc
cagttcttgcatgaggatccgtccgcggcgagtgctgtgcacggcggaggaggaggagga
ggcagcggcagcccggtgactttagccctcgccggcggggcagtgagcaccgcggcggct
gtagcagggtacccgctcgctgggaacgcagtagcggcgtgtccgagcggaggtccggcg
ggtgtcgccaaaaagagtgatgctctcgggcctgcaggagcggctctggacggccagttg
ttgagcatcgctgggatggacggtggggcgctcagtgatgccaatctgaccaactcctat
ttcagcagcagctttattggagtcaatgggtttggaagcccagcagagtccaaatactca
atgatgcagaggatgaccagcagcagcagctccccgagtctccttaatgacggtgccaag
aatttcagccacagcgctcatgatcctgtaagttcccccacttcctccctgtttagcgac
tttggtgctttgagcataacacagaggagaaaggctcccaatcccgctgccacagagttc
atccctaaaggagcaccacgcatgtccacgatgtctcaggcagctgtaccgacatttccc
tcgccgctattcccccatcccagtctgagcggctcagccgcagcgggactcgcgccaggt
atgtctttgtctgctgggtcgtctcctctccactcgcccaaaatcactccccacacctca
cccgccccccggcgccgtagccacaccccaaaccccaacccagccaattacatggtgccc
accacggcgtcagagcaaggaggcggtgcccacatcatccagaaggagactgtaggagga
accacctacttttacactgataacacccctgctcccatgactggaatggtgtttccaacg
taccatatctacccacaaacagcacctcatgtggcgtacatgcagcccaaagccaacgct
ccgtccttctttatggctgacgagctcagacaggagttgattaacaggcatttgataacg
atggcccaaatcgatcagtctgagaacccaggagtcccgtctgaggtggacagctaccat
agcctgtttcccctggagcctcttctgccccccaaccgcctccagaaaaccagcaacttc
agttacattacttcctgttacaaggcggtcaacagcaaagatgacctgccttactgtctc
aggaggatacatggcttcaggctggtgaacaccaagtgcatgatgctggtcgacatgtgg
aagaagatccagcactccaatgctgtcactctccgagaagtctttaccaccaaggctttt
ggagatcactcgttggtgttctcttatgacttccatgccggggctgagaccatgtacagc
aggcacttcaacgacccaacggctgactcttatttcaccaagaggaagtggggtccacac
gagcctcctcctcctcggcagcatgccggtctgctgcctgagtctctgatctgggcctac
atcgtgcagctgagctcggccctgcgcaccatccacactgccggcctggcctgcagggtc
atggaccccagcaagatcctcatcactggaaagactcggttacgggtgaactgtgtaggc
gtgtttgatgtcttaacatttgacaatagtcagaccaaccacttggccctcatgccccag
taccagcaagcagatctgatctctctggggaaggtggtattggcgctggcctgcaactct
ctggctggcattcagagagagaacttgcagaaagccatggagctcgtgtctatcaactac
tcatccgacctcaagaacctcatcctgtacctgcttacggagcagagtcgcctgcgtagc
gtcaatgacatcatgcccatgatcggagccagattttacactcagctggacgcttcacag
atgaggaatgacgtcattgaggaagatctggccaaggaggtgcagaacggccgcttgttc
cgccttctggccaaactgggaaccatcaatgagagaccagaattccagaaggatccgacg
tggtctgagacaggagatcgctacctgctgaagctcttcagagatcacctgttccaccag
gtgactgaagcaggcacgccttgggtcgacctgagccacattgtgtcgtgtcttaataaa
ctggatgccggcgtgcccgagaagatcagcctggtgtctcgggatgagaagagcgtgctg
gtggtgacctactcagacctaaagcgctgctttgacagcaccttccaggaactgctggct
gccgccaacggctcactgtag
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