Pangasianodon hypophthalmus (striped catfish): 113541442
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Entry
113541442 CDS
T05759
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
113541442
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
phyp02000
]
113541442
Transporters [BR:
phyp02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
113541442
BRITE hierarchy
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
113541442
NCBI-ProteinID:
XP_026794204
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MGEADQRTAADKDISKRGQWSNKVEFLLAVAGNIIGLGNVWRFPYLCFKNGGGAFLIPYI
LFAVTCGVPLFVLNICIGQYTKQSAATSWGKLCPLAGGFGHGGCVFALYFCLSYNIILAW
ALFYLIASFSSQLPWISCGNLWNTVNCAELMSNQNNMTANRTQRNFSISAVIEFWEGRVL
TVSPGIEILGKLNWEILLCLLASWVACYFCIWKGVKSTGKAVYFTAIFPYVMMFVLMLRG
LTLPGALHGIKYYLYPQPSRLADPQVWIDAGTQIFFSYSLGAGTLTVLASYSPYKNNCYR
DGIWLCVLNSCTSFVAGFVVFSVLGFMAEKLGADIEDVALPGPGLAFITYPQAVAMMPLP
QLWSVCFFIMLILLVLDTKFVGIEVVITSIIDIFPTMLQKPYSRELVLLFFCSACFSFQI
LLTTQGGVYIFHLIDYYGFNGACYFFMCLIETLVIGWIFGADRMIDVIEDMCDKRPSAFF
TYCWRYFTPLMCLGAFILCIVKYRPLMYNNVYVYPTWTCVLGWLMTLFSPMLVITWGLVK
LYTHSGSLKQRFKSLCTPDENLPLARKQRAQLQISETLMGGI
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagcagaccaaaggacagctgctgataaagatataagcaaacgaggtcaatgg
agcaataaagtggagtttctattagctgtagcaggaaatattattggtctgggcaacgtc
tggagattcccatacctgtgtttcaaaaatggaggaggtgcattcctgataccttatatt
ctgtttgctgtaacatgcggtgtgccgctctttgtcttgaacatttgtatcggccagtac
acaaagcagagtgcagcaacatcctggggaaaactctgtccattagcaggaggttttggt
catggaggatgtgtgtttgcattgtacttctgccttagctacaatatcatcctggcttgg
gctcttttctacctcattgcgtcttttagttcccagttaccatggattagttgtggtaat
ctctggaacacagtcaattgtgcagagctcatgtcaaaccagaacaatatgactgccaac
aggactcaaagaaatttcagtatttctgctgtcatcgaattttgggaggggcgagtgctg
actgtctctccaggtattgagatactgggtaaattgaactgggagattttgctctgttta
ctggctagttgggtggcctgttacttctgcatctggaaaggggtcaagtcaactggaaag
gcagtatattttacagccatctttccatatgtaatgatgttcgtgctgatgttaagaggt
ctaacgttacctggtgcactgcatggtatcaagtattacctgtatccacaaccctcacgt
ctcgcagacccacaggtttggattgatgcaggaacgcaaatattcttctcctacagtctg
ggagctggtaccctaactgttcttgcaagttacagtccttacaaaaataactgctataga
gatggtatttggctgtgtgtgctcaacagctgtactagttttgttgctggatttgtggtc
ttttctgtccttggcttcatggcagagaagttgggtgctgatattgaagatgtagcactg
ccaggtccaggtctggcatttataacctaccctcaggcagtagccatgatgccactgcca
caactgtggtcagtctgtttctttatcatgttgattttattggtcctggatacaaagttt
gttggaattgaggtggtcattacctcaataatagacatattcccgactatgctgcagaag
ccctacagtagagaacttgtcctgctattcttctgcagtgcctgcttctcctttcagatt
cttttaacaacacagggaggagtctacattttccatctaattgattattatggatttaat
ggtgcttgctacttcttcatgtgcttgattgaaacactagtaattggatggatttttgga
gctgatcgcatgattgatgtaattgaggacatgtgtgataagcgtcccagtgcattcttc
acatactgctggcgttattttaccccactgatgtgccttggagctttcattttatgcatt
gtgaagtatcgacctctcatgtataataatgtttacgtatatccgacctggacttgtgtt
cttggatggctcatgactttattttccccaatgctggtcattacatggggtttggtgaag
ttatacacccactcagggtcactaaaacagcggtttaaaagcctgtgtactccagatgaa
aatctccctctcgcccgaaagcaaagagcacagctgcagatcagtgagactctaatggga
ggaatttga
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