Pangasianodon hypophthalmus (striped catfish): 113541489
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Entry
113541489 CDS
T05759
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113541489 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113541489 (pcf11)
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113541489 (pcf11)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113541489 (pcf11)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113541489 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
113541489
NCBI-ProteinID:
XP_026794267
LinkDB
All DBs
Position
Unknown
AA seq
1493 aa
AA seq
DB search
MSAEAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFAEDIVAIIEAQIAKAPPA
EKLPVLYLVDSIVKNVGGQYLEVFTKNLITSFICVFEKVDENTRKCLFKLRSTWDDIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEELAPHPKVSEKNLAEEQII
RQQLLAKQKQLLELQQKKIELELEQTKAQLAASTNHPPHSVPVQFDPPAVSEPAPTQHKS
WTPPQADKPSTRDPRLNRASAPSVNTKEQGTFRKESQVTPPIVSALEKRVPVPPERPSKL
MRIPKKDTSANDEKAKSKAVSPLSKGVLHKSKDPEPEHPKTVDVNKKDPRLRKQVHEKTD
LKEEDVKEKKRNAERKEREDNGKGTEPQRSSNSRGKLVNGSLNKHDRFDTFQKQDIKVSK
TNIRKRSRSRSRSPPQHSPKRKDRRSPKRRTRSITPPPKSGKARQLSKNNEDDNQQANVR
EDRSTPKKNVSELRRLKRPLEDRTSEHRDVQPQRASPVEHKSAKDIKRWRSGWEENKPLK
QPDPDLPHGKPGLQRHKAWNSYQRPPTPRTLKQHRLSVDANLQIPDVLNSASKRDLLRKA
SQRLADGELSQEEFLNVAHQIKQIFQYQEERQRSDSWEGLNDDGVCTRKKSHGHMSDAEL
SYLEHKSKLRRTQLQRPAPTVQQSSPLRENVQHHRPQQEHDDPFTSDALKKGSEVFKPFS
GPDDPRRNNRPPSRTGPPFRNSPSPVGCDGNAGKSSSLPFEGPAQSMDMDQLEDGDISPR
FESPNSVHSDTGPDNDAPLGLDTPSRHEMMPGPGRGGRNLNESPGQTPPHASEVPSTQVN
MPRHDGANVPPRFDGHMSSHSQFEGTHGLMGQPRSEGPSRPHPPGRYEGNAGPGRYDGPG
AHGPPRFEGHGRYDGPGPHRFERPPLLKGPGRYDNQSGPHGPLRYSEPHSRFEGPGSGRF
DGSMVHQVPGRFDGPGPMRYNNPMQSNRFDGPARFDNPHITQGPPGGFESPMRYPSGMVN
YEGPRRIEGPGNQSGMMRFDNPAQPAPMRFEGQPSGMPRFDSAPQGPPRYRGPPNMQNSF
RPQGQMMIDQPQNQGPMLNPGIPPHNFNMGAPNAFDGQPLPFHMQQNVSQGSNFNVPEPT
PSGFQNSYRPVAPFPGAAPANHPQPVPVMPGPVQSFGQQNPATYNPPGSQFVQPESHLGQ
MDVNDLMAKLIDFGIIKPTQTDSSSESTSAIQSQSAPEEEEPEEEEQEEDDSLPDLTGFV
VDDMKQRHESVITKLYTGIQCYSCGMRFTASQTDIYADHLDWHYRQNRSEKDISRKITHR
RWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKNQEAAKEREFQSVKAAADVVHES
CEICQEQFEMYWEEDEEEWHLKNAIRVDEKTYHPLCYEDYRNTSSFVDSTPSPNKMLTEN
PLNAFLKQEREGEGSCSSIKEEPAEGDAEAVTVKQEVQDESEGGSQTISAIPF
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaagccgcgagggaagacgcctgtcgagagtatcagtcgtctctggaagac
ttgactttcaacagcaaaccgcacatcaacatgctgaccatcctcgctgaagagaatctg
cagttcgccgaggatatcgtcgctataattgaagcacaaattgccaaggcgcctcctgct
gagaagcttcctgttttgtacttagtggattccatagtgaagaatgttggaggacagtac
cttgaagtgtttactaaaaacctaatcacttcctttatatgtgtgtttgagaaggtggat
gaaaacactagaaaatgtctcttcaaattacgttccacctgggacgatatttttcccttg
aagaagctgtatgcattggatgttcgtgtgaattcaatagatcctgcttggcccattaag
cctttaccaccaaatgtgaatgccagcattcatgttaaccccaaatttttaaagccgact
gaagaactagctcctcatcccaaagtcagtgagaagaacttggcagaggaacaaattata
aggcaacagttgcttgctaagcaaaaacagttgttagaacttcagcagaagaagatagag
cttgaacttgaacaaacaaaagcgcaactggcggccagtacaaaccacccaccccacagt
gttccagtccagtttgatccaccagccgtgagtgagccagctcctactcaacacaagtca
tggactccaccacaggcagacaagccatcaaccagagatcctagattaaacagagcttcc
gccccatctgtaaatacaaaggaacaagggacattcaggaaggagagccaagtcacacca
cctattgtcagtgcacttgaaaagagagtacctgtacctccagaaagaccaagtaaacta
atgagaataccaaaaaaagatacctccgcaaacgatgaaaaagcaaaatccaaggcggtg
tccccattaagcaaaggagtccttcataaaagcaaagaccccgagcctgagcacccaaag
acagtagatgttaataaaaaggacccaaggttgcggaagcaggtgcatgagaagacggat
ctgaaagaggaagacgtcaaagaaaagaaaagaaatgcagagaggaaagaacgggaagac
aatggcaaaggcaccgagccacagagatccagcaactccagaggcaagctagtaaatggc
tctctgaataagcatgaccggtttgatacttttcaaaaacaggatattaaagtcagtaaa
acaaatatcaggaaaaggtctcggtctagatctcgttctccgcctcagcactctcctaaa
cgaaaagacaggcgttctccaaagagaagaacgaggagcatcactccacctccaaaatct
ggaaaggctaggcagttaagcaaaaataacgaagacgataaccaacaagcaaatgtcagg
gaggatcggagtacaccaaagaagaatgtttctgagctgaggcggttaaaaagaccactg
gaagacagaacttctgagcacagggatgtccagccacagagggcatcacctgtagagcat
aaaagtgcaaaagacatcaaaagatggaggagtggatgggaagaaaataaacctcttaaa
cagcctgacccagatctcccacacggcaaacccgggctgcaaaggcataaagcttggaac
agctatcagagacctccgacgcctcggacactgaaacagcaccgtctcagtgttgacgcc
aacctgcagattccagacgtgcttaattctgccagcaagagagatcttttacgaaaggct
agccagcgactggctgatggagagctatcccaggaagaattccttaacgtggcccatcaa
atcaagcaaatatttcagtatcaagaagaaagacagcgctctgattcttgggagggactg
aatgatgatggtgtatgtacaagaaagaaatcacatggacatatgtctgatgctgagctc
tcttacttggagcacaaatctaagctgagaagaacacagctgcaacgcccagcccctaca
gttcaacagagctcaccattgagagagaacgtgcaacaccataggcctcaacaagagcac
gatgatccattcacttcagatgcactcaaaaagggcagtgaagtatttaaaccattctca
gggcctgatgaccctagaagaaacaacagaccaccatctcgaactggaccccctttcaga
aattccccaagtccggtaggttgtgatggaaatgctgggaaatcttcaagtctgccattt
gaaggaccagcacaatccatggatatggatcaacttgaggatggagacatcagtcccagg
ttcgaaagtcctaacagcgttcactcagatacaggtccagataatgatgcaccactaggt
ttagatactccttcaaggcatgaaatgatgcctggaccagggagaggtggccgaaacctt
aatgagtctcctggccaaacaccgcctcatgcttctgaagtacctagcacgcaggtaaat
atgccaagacatgatggtgcaaatgttccgccacgatttgatggccatatgagttcccat
tctcagtttgaaggaacacatggcctcatgggacagccacgatcagagggtccgtccaga
cctcatcctccagggagatatgagggaaatgcaggtccagggagatacgacggtcctggt
gctcacggtccacctaggtttgaggggcatggccgatatgatggtcctggaccacacagg
tttgaaagacccccactgctgaaagggcctggaagatatgataaccagtcagggccacat
ggaccactgaggtattcagagcctcatagccgattcgaagggccaggatcaggccgtttt
gatggttcaatggtacatcaagttcctggaagatttgatggcccaggacccatgcggtac
aacaatccaatgcaatcaaatagatttgatggccctgcaaggtttgataatccccatata
acacaaggccctcctggaggatttgaaagcccgatgaggtatccttctgggatggtaaat
tacgagggaccaaggagaattgaagggccaggcaatcagtcgggcatgatgcgctttgac
aacccagcgcaaccagcaccgatgagatttgaaggacaaccctctggcatgccaagattt
gactctgcaccacagggtcctccacgataccgtggacctccaaacatgcaaaactcattc
agaccacaagggcagatgatgattgatcagcctcagaatcagggtccaatgttaaatcct
ggcattccaccccataattttaacatgggagcacctaatgcatttgatggtcaaccactg
ccatttcacatgcaacaaaatgtctcacaggggtccaactttaatgtgccagaacccaca
ccttcaggatttcagaattcatacaggcccgttgctcctttccctggtgctgctcctgca
aaccaccctcagcctgtgccggttatgcctggtccagttcagagctttggacaacaaaac
ccagcaacttacaacccaccaggttcccagtttgtacagcctgagagtcatctaggccaa
atggatgttaatgatctgatggcaaaactgatagactttggaataattaaaccaacacaa
acggattcgagcagcgagtccacatctgcgatccagtctcagagtgcaccagaagaagag
gaaccagaggaggaggaacaggaggaggatgattctctccctgatttgaccggctttgtt
gtagacgacatgaaacagagacatgaaagtgtcatcaccaaactatacaccggaatccag
tgctactcctgtgggatgcgctttactgcgtctcagactgatatttatgctgatcacttg
gattggcactacagacaaaaccgctcagagaaggacatcagtaggaaaataacgcaccga
cggtggtactacagtctcacagactggattgaatttgaagaaatcgctgatctcgaggag
agggcaaagagccagttctttgaaaaagtgcatgaggaggttgtacagaaaaaccaggaa
gcagccaaagagagagaattccagagtgtgaaggctgctgcagatgttgttcatgaatcg
tgtgagatttgccaagagcagtttgagatgtactgggaagaagacgaggaggaatggcac
ctgaaaaacgccatcagagttgatgaaaagacataccatcccctgtgttatgaagactac
agaaatacatcttcctttgtggattccaccccatcccccaataagatgctcacagaaaac
cctttaaatgctttcttaaaacaagagagagaaggtgaggggtcatgctccagtattaaa
gaagagccagcagagggagacgcagaggctgtaacggtaaaacaggaggttcaggatgag
tcggaaggagggtcacaaacgattagtgcaattccgttttaa
DBGET
integrated database retrieval system
