Pangasianodon hypophthalmus (striped catfish): 113541521
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Entry
113541521 CDS
T05759
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113541521 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113541521 (nup98)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113541521 (nup98)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113541521 (nup98)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113541521 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
113541521
NCBI-ProteinID:
XP_026794331
LinkDB
All DBs
Position
Unknown
AA seq
1809 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTSSTFGQQNTGFGTTGGFGASAFGTTNNTGGLFGATQNKPGG
LFGSSTFSQPVTSSTSSGFGFGATSGGTSNSLFGSTNTGGGGLFSQQGNAFGANKPASFG
TFGTSTSSGGLFGTTNTTSNPFGGTSSLFGSSGFTATQPGTTIKFNPPTGSDTMVKSGVT
TSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNPMAANTGGLFGAAAAATPSTAT
GLFGSSGTGFSFNQSKPSFSAGTSGFGTTPGGLFGQPSQANSLFKPFGQATTTQNTGFSF
GGTNTMGQANTSSMGLFGNTAASQAGGLFGNTANTSTATGFGTGTGLFGQPNAGFGNVGT
QNLFGNKPAGFGTTTTSAPSFGTGTGLFGNKPTLTLGTNTNTSTFGFGANPAGGSLFGNK
PATGTLGTGLGAGFGAGVGTGPSSLFGNTQNKIGSTLGTVGTFGGTSFNTGASTLNFGAP
QQPVALTDPNAAAQQAVLQQQLNALNYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKA
LTTPTHYKLTPRPATRLRPKALTSSGSGKSQLFDGLDDDEPSLTNGAFMPRRSIKKLVLK
NLNGSSLYNSPLNREADDLNSPSEYPQNGLSLRADAEETQDIEAEGGAEDDLQVSKFYTN
PIAKPIPHNQPSPSLQDTISELNMRRAVSARNGLDLSSEEISLGDESVQEERDEELEAQK
PPHPAGIVLTRVGYYTIPSMEELGKMLNENGECIVENFTVGRKGYGSVFFPGEVNLTNLN
LDEIVHLRRKEIIVYPDDKDKPSVGEGLNRRAEVTLDGVWPNDKTTCTQIKSPQRLSEMH
YEERLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEEDDVPPAKTETKKMKTA
IPAGLQQIPLTQQHQQMAPQAQSTAVLELLSRVSELDSDMADITQEPPADGVLCEEEDSV
LEDDTRMALRAATPAEPEPISASSQIASSLGINPHTLQIMKASLFAGDDDCDLFHEQLPP
KLLEEVSSPRLILGNSQARLSVGGLLQSKFTSGGGLFSHLPEVPFGVISQKLSKPAVPEA
PWPSLGTSIILPPPVPEVTLRTVGARRLGGPVPLDNSVTLGKGRLLMDVALYMGRSFRVG
WGPNWTLVHCGNPLSSSAESKDQSKDAMGFGFLPRPTKTRQITESPFKVHVEQVVGMEPK
ETAESLAVYHQPLEIGLKHSTISTDDVCPFIQPEKGVNALHDYAKWIVEVLKKAGAGDVV
LGHWQQVWTLCEALWGRLGDQDLEAEGGGDYREQHARRRTFSRWLSESAAQRIQEEVCQS
QTQHHVDAIFSYLTGHCISEACRLAQKNGDHRLSLLLSQAVGSQFSRDLLALQLADWNRM
QTDSFIQEERLHIFALLAGKPVWETTGCCINVCSELDWKRCLAVHLWYMLPPTASVADAL
AKYEAAFQGPEEGRKYACAPLPPYMDDVEQEALEEMEDTEFKKPLYDICFHLLKLYSDKH
YSLQQLLDPTTVTAEQLDYRLSWHLWNVLQALNYTHLSVPRQSLLHASYAAQLESAGLWE
MAVFVLLHIPDSLLREHAVREILNQHCALEETQESAEKEHFLTDKLLIPMQWIHEAKATR
ARRDGDRHREALHLYRAGHWNHCHRLIIQNLASDCIINDNHEYLKEFLEGLAVPERSVQI
QDWDTSGRVYLDYIRVIQTLKAIQQMDSPGYELERLHTDVTSLCSRIELLPCFKAKDRLA
QSEMAKRLANILRAVLSLQQGGEGTPDPRHIPLCHLAPHIGRLPMPEDYALEELRSLTQS
YLREYVVSH
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgttcgggactcccttcgggggaggaacaggaggatttgggacttca
tccacgtttggacaacagaacacggggtttggaacaacaggtggttttggtgcttctgct
tttggaaccacaaacaacaccggtggtctctttggggcaacacagaacaaacctggtggg
ctttttggctccagcacattcagtcagcccgtcacttcgtctacaagcagtggatttggg
ttcggtgccacaagcggcggtacctcgaacagcctctttggaagtactaatacaggaggc
ggaggccttttctctcagcaaggcaatgcattcggtgccaataaacccgcctcttttggt
acgtttggcactagtaccagcagcggagggttgtttgggacaaccaacaccacctccaat
cctttcggaggaacgtcctctctgtttggatcctcaggctttactgctacccagcctggt
acaaccatcaaatttaatccaccaacaggaagtgacacgatggtaaagagcggcgtgacg
accagcatcaacaccaagcaccaatgcatcacagccatgaaggagtatgaaaacaaatct
ctagaggagttaaggttggaggattaccaggcagggaggaaaggaccctccaacccaatg
gcagccaacacaggcggcttgttcggggctgcagccgccgcgactcccagcactgctact
ggcctcttcgggtcctcgggtaccggcttcagcttcaaccagtccaagccctccttcagc
gctggcacaagtggctttgggacgaccccaggtggtttatttggccagccgtcgcaggct
aatagtctcttcaagcccttcggtcaggccaccaccacccaaaacacaggcttctcattc
ggaggcaccaacaccatgggccaggccaataccagcagcatgggtctgtttgggaacacg
gctgcctcacaggccggaggtctgtttggaaacacggctaacaccagcacagccactggc
ttcggcacgggcactggactctttgggcagcccaatgccggctttgggaatgtgggtaca
cagaatctgttcggtaacaagcctgctggttttggcaccaccaccacgagcgctccctcc
tttggcacaggcactggcctgtttggcaacaaacccacactcactttggggacaaacaca
aacacctccacctttgggtttggagccaatcctgctggaggcagtctgtttggaaacaaa
cctgccactggtacactaggaacaggtctcggagcaggttttggagcaggtgtaggtaca
gggccgtcatctctgtttggaaatacccagaacaagataggctccactctggggacagtg
ggaacgtttgggggtactagtttcaacacaggagccagcacgctgaacttcggagcaccg
cagcaacctgttgccctgacagatcccaacgctgcagcccagcaagcagtgctacagcag
cagctcaatgcgcttaactattcacctttcggagattcgcccctttttagaaacccgctc
tctgaccccaagaagaaagaggagcgcctgaagcctacaaatccagctgcccagaaagcc
ctgacgacccctacacactacaagctcacccctcgtcctgccacgcgtttgcgtcccaag
gccctcacctcgtcaggttcagggaaatctcagcttttcgatgggctagacgacgatgaa
ccttctctcaccaacggagcttttatgcccaggaggagcataaagaagcttgtgctgaag
aacttgaatggaagcagtctgtacaacagcccactgaacagggaggctgatgacttgaac
tcgccgtcagaataccctcagaacggcctcagtctgagagcggatgcagaagaaacccaa
gatatagaggcggaaggaggagcagaagatgatctgcaagtctccaagttctacaccaac
cccattgctaagcccatcccacacaaccagcccagtccctcgcttcaagacaccatcagc
gagctgaacatgaggagagccgtcagtgcccgcaatggcctggacctgagcagtgaggag
atctctttgggagacgagagtgttcaggaagagagagatgaggagctggaggcacagaaa
cctcctcacccagccggtatcgtcctcactcgggtgggctactacaccatcccttccatg
gaggagttggggaagatgctgaatgaaaacggggagtgtattgtcgagaacttcacagtc
ggaaggaaaggctatgggtcagttttcttccctggtgaagtgaatttgacaaacctgaat
cttgatgaaatcgtgcacttgagacgaaaggaaataatcgtctaccctgatgacaaagat
aagccttctgtaggagagggcctcaacagacgagcagaagtgacccttgatggcgtttgg
cccaacgacaaaaccacctgcacccagatcaaaagtcctcagcgtctgagtgagatgcac
tacgaggaacgtctggagaacgcctcacgcaaacaaggtgctcgcttcctggagtacaga
ccagagaccggctcctgggtgtttgaggtggcacacttttccaagtacggcctgcaagac
tccgatgaggaagacgacgttcccccggctaaaaccgagacgaagaagatgaaaaccgcc
atcccggccggactacaacaaattccactgacccagcagcatcagcagatggcgccacaa
gctcagagtacggcagtactggagcttctgagccgcgtgtcggagctggacagtgacatg
gcggatattacccaggagcctccagcagatggagtgttgtgtgaggaggaggacagcgtg
ctggaggatgacaccaggatggccctaagagcagcaacccctgctgagccagagcccatc
tctgcctccagtcagatcgcctcctcattaggaatcaacccgcacactcttcagattatg
aaggcatccctgtttgcgggtgatgacgactgcgacctctttcacgagcagctccctccg
aaactcttggaggaggtgtcgtctccccggcttatacttggtaactcccaggccaggcta
tcagtcggtggtcttctgcagagcaagttcacctcaggtggagggctgttttcacacctg
ccagaggttccttttggagtgatctctcagaagctgagtaagccagcagtaccagaagcc
ccatggccctcactgggcacctccattattttgcctcctcctgttcctgaggtcacgctg
aggactgtgggagcacgcagactggggggtcccgtgcctcttgataactcggtcactctg
ggaaaaggccgtctgctgatggacgtagcgctgtacatgggccgctcattcagggtggga
tgggggcctaactggacgctcgtgcattgtgggaatccacttagctcatctgcagagtca
aaggatcagtctaaagacgccatgggcttcggcttcttgcccagacctaccaagacccgg
cagatcactgaaagcccctttaaagtacacgtggagcaggtggtgggaatggagcccaag
gagacagcagagagcctggctgtgtaccaccagccgcttgagatcgggctcaagcacagc
acgatcagcactgatgatgtctgccccttcatccagccagagaaaggagtcaacgctctg
cacgattacgccaagtggatcgtggaggtcctcaagaaggcaggagctggagacgttgta
cttggtcactggcagcaagtgtggactctgtgtgaggctctttggggaaggcttggagat
caggacttggaggcagagggcggcggagattatcgagagcaacatgcgagaaggcgcact
ttctcccgctggctatctgagagcgctgcccaacgcatccaggaggaagtgtgccagagt
cagacacagcaccatgtcgatgccatcttcagctacctgaccggccactgcatcagtgag
gcttgtagattggcccagaaaaacggagaccatcgtctgtccctgctgctgtcccaggcc
gtgggctctcagttcagcagagatcttttggctctacagttagcagactggaacagaatg
cagacagactctttcattcaggaggagagattgcacattttcgccctacttgcaggcaaa
ccggtttgggagacaacaggctgctgcataaatgtgtgctctgagctcgactggaaacgc
tgtttggctgtgcatctgtggtacatgctgcctcccacagcctctgtagcagacgctctc
gccaaatacgaagctgcctttcagggtccagaagagggaagaaaatatgcctgtgctcct
ctccctccctatatggatgatgtagaacaggaagctttggaagagatggaggatacagaa
tttaaaaaacccctctatgacatctgtttccatctgctcaaactttacagtgacaagcac
tacagcctgcagcagctgctggaccccactacagtgacggcagagcagctagactacagg
ctaagttggcacctgtggaatgtgctacaggccctgaattacacccacctgtcagtgcca
cgccagagtctcctacacgctagctacgctgcccagctcgagagcgctggcctctgggag
atggcagtttttgttttgctgcacatccctgactcattgcttcgagagcatgctgtgcgg
gagatcctgaaccagcactgcgccctggaggagactcaggagtctgcagagaaggaacac
ttcctcactgacaagctgctcatccccatgcagtggattcatgaagccaaggccacccgg
gcgcgcagggacggagacaggcaccgcgaagcactgcacctctacagggctggacactgg
aaccactgccaccggcttatcatccaaaacctggcttcagactgcatcattaatgataat
catgagtatctgaaggagtttctggaaggcttggcagtgcctgagcgcagcgtgcagata
caggactgggacacatctggacgtgtctatctggactacatccgcgttattcagacccta
aaagccattcagcagatggacagcccaggatatgagctggagcggctacacaccgacgtg
acatccctgtgcagcaggattgaactccttccctgtttcaaagccaaagacagactggcc
cagtcagaaatggccaaacgtctggctaacatcctgcgtgcggtgctaagccttcagcag
ggtggagagggcacgccggatcctcgtcacatccccctgtgccatctcgcacctcacatc
ggacgcttacccatgcccgaggactacgctctggaagaacttcgcagcctcacccagtct
tacctacgtgaatatgttgttagtcactga
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integrated database retrieval system
