Pangasianodon hypophthalmus (striped catfish): 113541563
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Entry
113541563 CDS
T05759
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
phyp03450
Non-homologous end-joining
phyp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113541563 (rad50)
03450 Non-homologous end-joining
113541563 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
113541563 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113541563 (rad50)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113541563 (rad50)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113541563 (rad50)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113541563 (rad50)
BRCA1-C complex
113541563 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
113541563 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
SKA1
ABC_tran
AAA_29
AAA_16
Intein_splicing
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
113541563
NCBI-ProteinID:
XP_026794413
LinkDB
All DBs
Position
Unknown
AA seq
1313 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGEPVAVQRSMQSTQKGKKAPEFKTLEGVIT
RIKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEI
FSATRYIKVLETLRQLRLKQANTVKSCQMELKYLKQNKEKAQEIKELLSTKEAQLAASKE
SVQRIENQIDPMENRLNDIDDNLGKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQG
SDEQLQEMYENHQLTVKKKEKRLTECQRDLERAGRECQRMNYIKSDLLVEQGRLQMEADK
QVLHVKNRDAQVKSLASYLEMEGYDRAPFNERQLQSFHKQVRERQDQEAEALNRVMTDLQ
EKETQKQQNIDEIRDKKTGLERTIELKKDIQAKKQQELKNIKSDLQRLEGSSSRLQELEA
ELTKAERELEKAVQDSTVDRLKMEVQELQREKVELDQAQRKLDQEMETLNIHTTARTQMD
MLKKDKTDKEDQIRKIKSRHNEDLVSLLGHFPNKRELEDWIHSKSREINSIREKLSKLNK
ELASREQTKSHCTAEIRRKEQQVVSYEEKLFNVCGSQDFQSDLSKLQDDLEKCSKQRAML
AGATAVYTQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDL
KRKERKRDDMMALKPVRQSIAELQEKDLPELRNKLQSVNREIEKLKKDTEEQESLLSLLM
SEEDTAKACLQDISLMDRYQLDLKDVERKIAGHTAKLQGVDLSRTMQHVSQEKQEVQHRL
DTTCSKMELKRKLIQDQQEQIQALKSSVNEIRAEKLQISSNMQKQQQLEEQCLEFSAEIQ
QLNREIRDAKEQVSPLAITLEKLQHEKQDLIERRKQKQSEGQEKIDAIKERVKNLAILER
EITKYIEEGKDDYKQQKEAELQEINAQLIEAEKQREKINIDIANIRQDIDTQKVQERWLQ
DNLTLRKRVEELKEVSKRREVLLKEMGNMQVMELRNERRELERKVEDLKKNRSVALGRQK
GFEEEILRFRKELREDQYCQAEERFRDKMIIMRTTELANKDLDIYYKALDQTIMKFHSMK
MEEINKIIRDLWRSTYRGQDIEYVEIRSDVDENVSAGTKRRVYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYMEHFYRIKKNQDQCSEISKCCITSLTSYLR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatcgagaagatgagcatcctcggcgtgaggagttttggagtggaggataag
gacaagcagatcatttcgttcttcagtcctctgacggtgctggtcggcccgaacggagcc
ggaaaaacgactattattgagtgtctgaaatacgtcacctcgggagattttccaccggga
agtaaaggaaacacttttgttcatgatccgaaggacgcccatgaaacagatgtacgcgct
cagatccggctgcagttcagagacgttaacggcgagcctgtagcagttcagcgttccatg
caaagcacacagaagggcaaaaaagcgcccgagttcaaaacccttgaaggagtcatcacc
agaataaagcatggagaaaaggttagtctgagctcaaaatgtgctgagatagaccgtgag
atgatctcagctctgggtgtttcaaaagcagtgctcaaccatgtcatcttctgccaccaa
gaggagtctaactggcctctcagcgaaggaaaagccctcaagcagaagtttgatgagatt
ttctcagcgacgaggtacatcaaggtgctggagacccttcgtcagttaaggctgaagcag
gccaacactgtcaaatcctgtcagatggagctgaaatatctgaagcagaataaggaaaag
gctcaggagatcaaggagctgctgtccactaaagaagctcagctagcagcttctaaagaa
agtgtccagcgcattgagaaccagatcgaccccatggagaatcggttgaatgacattgat
gacaatctaggcaaagtcatgaaactggataatgacatcaaggctctggacagcaggaag
aaacagatggaagatgacaatcgtgaattagaggagaagatggagcaggtgtttcagggt
tcagatgagcagctgcaggagatgtatgagaatcaccagctcactgtgaagaaaaaagag
aagagactcacagaatgtcagcgtgatctggagagggcaggtcgtgagtgccagaggatg
aactacatcaaatcagaccttctcgttgaacagggtcgtctccagatggaagcagacaag
caggtgttgcatgtaaagaaccgagatgctcaggtgaagtcattagcttcttacctggaa
atggaaggatatgacagagctcctttcaatgagagacagctccagagcttccataaacaa
gtcagagagagacaggatcaagaggccgaggctctcaacagggttatgactgatctacaa
gagaaagaaacacagaagcagcagaacattgatgagattcgtgataagaagacaggctta
gagaggaccatcgagctgaagaaggatatacaggccaagaagcagcaagagttaaagaac
atcaagtctgacctacagagactggaaggttcctcatccagacttcaggagctagaggct
gagctcacaaaagcagagcgagagctggagaaggctgtgcaagattccactgtggaccgt
ctgaagatggaggtgcaggagctacagagagaaaaggtggaattggaccaggcccagcgc
aaactcgaccaggaaatggaaaccctcaatatacacaccacagcacgcacacagatggac
atgctgaagaaagataaaactgataaagaagatcagataaggaagatcaagtccaggcac
aatgaagacctggtttctcttctgggccactttcctaacaagagagagcttgaggactgg
attcatagcaaatctagagagatcaactctatcagagagaagctgagcaagctcaataag
gagctggcatccagagagcaaaccaagagtcactgtacagctgagattcgacgcaaagag
cagcaggtggtcagctacgaggagaaactcttcaatgtgtgcggtagtcaggacttccag
tctgatctgagcaaattgcaggatgacctggagaagtgctccaagcagagagcgatgctg
gcgggggccacggccgtgtacacccagttcatcagccagctgacggaggagggagagccg
tgctgcccggtgtgtcagcgtgtcttcccctcagaggctgagctccaggacgtcattaat
gacatgcagtccaaactgcgtctggtgccggacaagctgaaaaacacggagcaggacctg
aagaggaaggagcgcaagcgtgatgacatgatggccctcaaacccgtcagacagtctatt
gcagagctgcaggagaaggatctgccagagttaaggaataaactgcagagtgtgaaccgt
gaaatagagaaattgaagaaagacactgaggagcaggagagtctgctgtctctgttgatg
tctgaggaggacacggccaaagcctgcctacaggacatttccctcatggaccgctaccag
ctggatctgaaggatgtggagaggaagatagcggggcatacagccaagcttcagggtgtg
gacctgagccgcacaatgcagcacgtcagccaagagaaacaggaggttcagcatcgcctt
gacaccacctgcagtaagatggagctgaaacgcaaactcatccaggaccagcaggagcag
atacaggccctaaagagtagtgtgaatgagatccgtgctgaaaagcttcagatttccagt
aacatgcagaagcagcagcagctggaagagcagtgtttggagtttagtgcagaaattcag
caactgaacagagaaatacgggatgccaaggagcaggtctctccactggccatcacttta
gagaagctccagcatgagaagcaggatctgattgagcgcagaaagcaaaaacaaagtgaa
ggccaggagaagattgatgctatcaaagagagagttaaaaatttggccattttagaaaga
gaaataaccaagtacattgaagagggcaaggatgactacaagcagcaaaaagaggcagaa
cttcaggagataaatgctcagctgattgaagctgagaaacagcgagagaaaatcaacatc
gacatagctaatatccggcaagatatagacactcaaaaggtccaagagcgctggcttcag
gataatctgaccctgagaaagcgtgtggaggagctgaaggaggtttccaagaggagagag
gtcttactgaaggagatgggcaacatgcaggtcatggagctacgcaatgagcggcgggag
ttggagcggaaggtggaggacctgaagaagaatcgcagtgtggctttggggcgacagaag
ggctttgaggaggagatcctgcgttttcgcaaggaacttcgtgaggatcagtactgccag
gctgaggagagattccgggacaagatgataatcatgaggaccactgagctagctaacaag
gacctggacatctactataaagcactggaccaaacaatcatgaagtttcacagtatgaag
atggaagagatcaacaaaatcattcgagacctgtggaggagtacatatcgtggacaagat
attgaatatgtagagatccgctctgatgtggatgaaaatgtctctgctggtacgaagaga
cgagtctacaactacagagtggtcatggtcaaaggagacacagctttagacatgcgagga
cgctgcagtgctggacagaaggttttggcgtcgctcatcatccggttggctttggcagag
acgttctgtctgaactgtggaatccttgcacttgatgaacccactaccaatctggacaga
gagaacatagagtctttagcccacgccttggtggaaatcatcaagagtcgctctcggcag
cgtaacttccagctgctcatcatcacccacgatgaggattttgtggagcttctgggtcgc
tccaactacatggagcacttctacaggatcaagaagaaccaagaccagtgctccgagatc
tccaagtgctgcatcacaagtctaaccagctacctgcgctaa
DBGET
integrated database retrieval system
