Pangasianodon hypophthalmus (striped catfish): 113541720
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Entry
113541720 CDS
T05759
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113541720 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113541720 (nfrkb)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
113541720 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
113541720
NCBI-ProteinID:
XP_026794659
LinkDB
All DBs
Position
Unknown
AA seq
1288 aa
AA seq
DB search
MDSLDHMLTDPLDSGMGYDGCVMEECMLGNCRVRIPEDFLEDPDIFFSVMSESTWSEVLT
DAQRQHLRQLLPHFPENNVSEQDRVISDLFNGQNFCFGNPVHLAQKLFRDGYFNPEVVKY
RQLCTKSQKKRQIYSLQQYYHKLLKQILISRKELLDMAVRSGPELAVKRRYPPPSHGEER
EQRVRRRVNRILREVKTECGDSNVSSDEDDTASWLSTPPSPSSPTPTVSLRVLPSLSTQD
MKTIDKPELGEKELRAMLRRHREKRKRQPDHPDLMTSDLHLGDIMSRVNIGKKGSSMALI
DLALSKKKMREEKRRKKMRPIKTESDDCCEGQTPAASLSATISDSTPALLQSVKEEAMEE
SQNSPDMVEEITTSFFHLLEDILRQDNLVSSSLIEEKVQQWQASAASALNPWFSMAPCWS
ELIAPALQFLAGESKTGSMALPSGFTPYVEFRELTQQWKWIGPTQDSEKDLNALCILWLE
SKDHVVVKQEGEEAAELTPPAPRVWTDYVVRPSTGEERHIFQEQEQQRYDQPHKAFTFRM
HGFESVVGPVKGVFDKETSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEI
CELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDRSQEEFE
RIHQAQAAAAKARKALQQKPKPTPKPKSGNKEAAVKSSATEGQSSAPEGVSIPAVSLPQP
PSTPTPSTPGTPKSPLPPTVSTPTKAGVPDPVKTSPSVLLVSPPSVPQLGTLPSAAQVAP
QASQQASVQPAARVVAHSASTGSLPQVRVVTAQTGLPAVSAGQAATLIHHQTPHHIRLPV
TVAHSKGIAQAVVTLPLRSQSTGSPIQVQASRAQTGISVPGLASALAVSKAQSSSPGSPA
QNTPSPAVLQGVTSQNIIKQVAITGQLGVKAQNPAGIPLTATNLRIQGKDVLRLPPSSIT
TDAKGQTVLRITPDMMATLKLTPDMLASASSTTAKGISATLHVTPQQAPPTVSSNPVAPA
TAEALTAKASSSLPAPGTATLVKATCDTAIRLMPALAVTMADPKARTFSTVTSSDSKAGG
TTIRIVPSLGVIPQKQGQTVTTTTSAKPGTASSGAATVTIATSGVAGAKGVTLGTPAVGS
PLSLGTAAATVRQVPVTATVVATQPGKLPARITVPLSVLSQPLKSKSVVNTPILKGNIST
NIGNLGRNIILTSMPAGTKLIAGNKPVSFVTAQQLQQLQQQGQATQVRIQTVPAQQLQQH
SASSSPKSTVSTVMVSTAPSAKTTPDPQ
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggattctttagatcatatgttaacagaccctttagactcagggatgggctacgatggc
tgtgtgatggaggagtgcatgttgggaaactgcagagttcggataccagaagattttcta
gaagatccagacattttcttctctgtgatgagtgaaagcacctggtctgaggttctgact
gatgcacagagacaacatctccgtcagctcctaccacactttccagagaataacgtttca
gagcaggacagagtcattagtgacctcttcaacggccagaacttctgctttggaaacccc
gtgcaccttgcccagaagctatttagagatggctattttaacccagaagtggtcaagtac
aggcaactttgcacaaagtcccagaaaaagcgtcaaatctactctctccagcagtactac
cacaaactgctcaagcaaatcctcatctccagaaaggagttgttggatatggctgttcgc
agtgggcccgagctggcagtgaaacggcgttaccctcctccttcccacggagaggagcga
gagcagcgtgtgaggcgcagagtgaaccgtatactgcgggaggtgaagaccgagtgtggg
gacagcaacgtgtcctctgatgaagacgacacggcttcttggctgtcaacgcctccatcc
ccatcttctccaacaccgacagtctctctcagggttctgcccagtctctccacccaggac
atgaaaactatagataagccagagctgggagagaaggaattgagggccatgctgagaaga
cacagagagaagaggaaacgacaaccagatcatcctgacttgatgacatcggacttgcac
cttggtgacatcatgtcgcgagtaaatataggcaaaaaaggatccagtatggccttaatt
gacttagccttgtctaagaagaagatgagggaagagaaaaggaggaagaagatgcgaccc
attaaaaccgaatccgacgactgctgtgagggtcagacaccagcggcctcattgtctgcc
accattagcgacagcacacctgctctcctgcagagcgttaaggaagaggctatggaggag
tcccagaacagccctgacatggtggaggaaataaccactagcttctttcatctgctggaa
gacatccttagacaggacaatctggtgtcctcttcactgattgaggagaaggtccagcag
tggcaggcctctgctgctagtgcactcaacccctggttctccatggccccttgttggtca
gagctaatagcacccgctctacagttcttagctggggagagtaaaactggctctatggct
ctacctagtggcttcactccgtatgtggaattcagagagctcacccagcagtggaaatgg
attggacccactcaggacagtgaaaaggatctcaatgctctttgcatactttggctagag
tcaaaggaccatgttgtagtcaagcaagaaggagaagaagcagcagaactgactcctcca
gctcccagagtatggactgattatgtggtgaggcccagcacaggagaggagcggcacatc
tttcaagagcaggagcagcaacgctatgatcagcctcacaaggccttcaccttccgcatg
catggctttgagtctgtggtggggccagtcaagggtgtttttgataaggaaacttccctc
aacaaagcccgtgagcactcactgctgcgctctgaccgtccagcctacgtcaccatcctc
tctctggtgcgggacgcagctgccagactgcctaatggtgaaggcacccgggctgagatc
tgtgagctgctaaaagactcccagttcttggctcctgatgtcaccagtgcacaggtgaat
acagttgttagcggtgcactcgaccgcctgcactatgagaaggacccatgcgtgaaatac
gacattgggcgcaagctgtggatctacctgcaccgagaccggagtcaggaggagtttgag
aggatccaccaggctcaagcggccgctgctaaggcacgcaaagctctgcagcagaaaccc
aaaccaacccccaagcccaagtctggaaacaaggaagcagctgtgaagagcagtgctaca
gagggccagagctcagcgcctgaaggggtttctatacctgctgtcagcttacctcaaccc
cccagcacaccaacaccaagcaccccaggcacaccaaaatctccactaccccctacagtg
tctacaccaaccaaagcaggggtgccagatccagtcaaaaccagtcctagcgttctgctg
gtgtctcctccctccgtgccacagctgggcactttgccgtctgccgctcaggtcgctcct
caggcctcccagcaggcctcggtgcagcctgcagctcgagtggtagctcattcggcttcg
acagggtctctgccgcaggtgcgtgtagttactgcgcagaccggccttcctgctgtttct
gcaggccaggcagccacgctgatccaccaccagacccctcaccatatcagactgcctgtc
actgtggcccacagtaagggcattgcccaggctgtggtgactctgcctttgaggagccag
tccacaggaagtcctatccaggtgcaggcatcaagagctcaaactggcatctctgtgcca
ggcctggcttctgctcttgctgtcagtaaagctcagagcagttcgccaggaagccctgct
caaaacaccccatctcctgcagtgctgcaaggggtcaccagtcagaacatcatcaaacag
gttgcaattactggtcagctgggtgtgaaagcccagaacccagcaggcatcccactgact
gccaccaacctccgaattcagggtaaagatgtgctgcgcctgccgccctcttcaatcacc
accgacgccaagggacagacggtgctgcgcatcacaccggacatgatggctactctcaaa
ctcacccctgacatgctggccagtgccagcagcaccactgctaagggcatttctgccacc
ctgcacgtgaccccacagcaagcccctcccactgtttcatctaaccctgttgccccagcc
accgctgaggccctgactgccaaagcttcctcttccctgccagcaccaggcaccgctacc
ctggtgaaggccacatgtgacactgctatccgcctcatgcccgccctggccgtcaccatg
gcagatcccaaagcccgtaccttctccaccgtcacctcctcggactcaaaagctggtggg
accaccattcgcattgtgcccagcctgggtgtaataccacagaaacagggtcagacggtc
accaccactacaagcgccaagcctggcactgcttcttcaggggcagccacggttaccata
gcaaccagtggagtggcaggggctaaaggggtgacgctaggcactcctgctgtgggttcg
ccgctctctctgggcactgctgcagccacagtgagacaagtgcctgtcactgctacagtg
gtggccacacaaccagggaagttacctgcaaggatcacggtgcctttgtccgttcttagt
cagcctctgaagagcaaaagtgtagtcaatacaccaatactgaaaggaaacatcagtact
aatattggtaatcttggcaggaatattatcctgaccagcatgccagcaggcaccaagctc
atcgccgggaataagcctgtcagcttcgttacagctcagcagctgcagcagctgcagcaa
cagggccaggccacacaggtccgtatccagactgtcccagcacagcaactgcagcagcac
tcagcatccagctcccctaaatctacagtgtccactgtgatggtgtccactgccccctcg
gccaaaacaacccctgacccacagtga
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