Pangasianodon hypophthalmus (striped catfish): 113541731
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Entry
113541731 CDS
T05759
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113541731 (ddx10)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113541731 (ddx10)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
90S particles
Helicases
113541731 (ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
BUD22
Motif
Other DBs
NCBI-GeneID:
113541731
NCBI-ProteinID:
XP_026794680
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MRIKKGKEKKNLPQDPVKNFEKWKKKHDKSRKESKRPKKKREWESERENIQKLVAKYTEI
NPKEAVKFSDFPLSKKTLRGLLEGQYRQPTEIQRQTIGFALQGKDVLGAAKTGSGKTLAF
LIPVLECLYRNQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKD
ESLKIHRTNIIICTPGRLLQHMDENASFHASELHMLVLDEADRILDMGFADTLNAIVENL
PKTRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEQAKFSTPATLEQSYVVCELHEKVNM
LFSFLRSHLQKKIIVFFACCKEVQYLFRVFCRLRPGISVLALHGKQPQMKRVEVYNDFVR
KKAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLILLPSE
EKGMIAQLQEKKVPINKIQVNPEKLTCVRQKLEAFLAQEKEQKERAQRXXXSYLRSIFLM
KNKDVFDVFKLKLPEYATSLGLAVPPRVRFLNKAQKQKDEVTQEISTAADADSDEEIQSF
KAQFRSDQSSNPDSQSEEEEEEEEDDEEESDEEEEQVKSIGQLCSADDDEDEDLKDLDLL
TVKRKDVFNVSEDKEEEEDPKDKSKKVSRFTEAKKAQKRNFKLNTKKVFTEDGEVVQQWP
PLQRAVVPDDEEDDEDTTGINVEAAKERLRREDQEFDKKEYSRRIKEKHREKRLKEKAAR
REASKQAKEEKEKKKKAAGIGDEDGDDDDDDEEEEVVAYLSGADDEEFDPSTLPDPDKVR
NSEDEDEESSDGPELMGRKRTHSSSEEDDDDNGHWGTGRKKAKQHSSEPEPLNTGLSLAE
DEELVLHLLGGQS
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcgaataaaaaaaggaaaagagaagaaaaaccttcctcaagacccagttaagaatttt
gagaaatggaagaagaagcatgacaaaagcaggaaagaaagtaaacggccgaagaagaaa
cgcgagtgggagagtgagagagaaaacatccagaagctggtggccaaatacacagagata
aatccaaaagaagctgttaagttctctgattttccactctcaaagaagactctgcgaggt
ctgttagagggtcagtatcggcagcccacagagatccagagacagaccatcggctttgct
ctgcagggaaaagatgtcttgggtgctgcaaagaccggctcggggaaaactcttgctttc
ctcattcctgtgctggagtgtctgtaccgtaaccagtggacagccatggatggtctcggt
gctcttataatctctccaactcgagagctggcttatcagacattcgaggtgctgaggaaa
gtggggaagaaccatgaattctcagctggacttgttattggtggaaaggacctcaaggac
gagtcgctgaagattcatcgcacaaacatcatcatctgcacaccaggacgtctgctgcag
cacatggacgaaaatgccagcttccacgcctcagagctgcacatgctcgtgctggatgaa
gctgacagaattttagacatgggcttcgctgacacgctcaacgccattgtggagaacctt
ccaaaaaccagacagacgctgctgttctccgccacacagaccaagtctgtgaaagacctg
gccagactcagcctgaagaaccccgagtatgtgtgggttcatgaacaggctaaattcagc
actcctgctactctggagcagagctacgtagtgtgcgagctgcatgagaaggtcaacatg
ctcttctccttcttgaggagtcacctgcagaagaagattattgtctttttcgcttgctgc
aaagaggtgcagtacctgttccgtgtgttttgccggctgcggcccggtatctcggtgttg
gccctgcacggaaagcagccgcagatgaagagagtggaagtctacaacgactttgtccgc
aagaaagccgctgtcctcttcgccacagatatcgctgcaagaggacttgactttcctgct
gtgaactgggtgcttcagtttgactgcccagaggacgccaacacgtacatccacagagtc
ggcaggacagccaggtataaagagggaggagaagccctgctcatacttctgccctcagaa
gaaaagggcatgatcgctcagcttcaggagaaaaaagtccccatcaacaaaatccaggtg
aacccagagaagctgacgtgcgtgcggcagaagttggaggccttcctggcccaggagaag
gagcagaaggagagagctcagaggnnnnnnnngtcttaccttcgctccatctttctgatg
aagaacaaagacgtctttgatgtgtttaagctgaagctcccagaatacgccacgtctctg
ggcctggctgttcccccacgggtgcgtttcctgaataaagctcagaaacagaaggacgag
gtgacgcaggagatcagcactgcagctgacgctgactctgatgaggagatacagagcttt
aaagcccagttcagaagcgaccaaagcagtaaccctgactctcagtctgaagaggaggag
gaggaagaggaggacgatgaggaggagagtgatgaggaagaagagcaggtgaagtctata
ggccagctctgcagtgctgatgacgatgaggatgaagatctgaaggatctggacctgctg
acagttaaacggaaagatgtgtttaatgtcagtgaagacaaggaggaggaagaggatccc
aaggacaagagcaagaaagtgtccaggtttacggaagcaaagaaagctcagaaaagaaac
ttcaagttgaacaccaagaaggtcttcactgaggatggagaggtggtgcagcagtggcct
ccgctacagagagccgtagtgccagatgacgaggaagacgatgaggacacgacaggcatt
aacgtggaagctgcaaaagagcgactgcgcagggaggaccaagagtttgacaagaaggaa
tacagcaggaggattaaagagaaacaccgtgagaaaaggctgaaggagaaggcggcacga
agagaagcaagcaaacaggctaaagaggagaaggagaagaagaagaaggcggctggcatt
ggggatgaagatggtgatgatgatgatgatgatgaggaggaggaggtggtggcgtacctg
tcaggcgccgatgatgaagagtttgaccccagcacgctacccgaccctgacaaagtgcgc
aattcagaggatgaagatgaagaaagcagtgatggccctgagcttatggggaggaagagg
acccacagcagtagtgaagaagatgatgatgataacggacactgggggacagggaggaag
aaggccaagcagcacagctcagaacctgagcctctgaacactggtctctcactggcagag
gatgaggagttggtgctgcatttactaggaggccagagttag
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