Pangasianodon hypophthalmus (striped catfish): 113541737
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Entry
113541737 CDS
T05759
Symbol
rbm22
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113541737 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113541737 (rbm22)
Spliceosome [BR:
phyp03041
]
Complex B
Other components
Prp19-related factors
113541737 (rbm22)
Complex C
113541737 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_occluded
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH_4
zf-CCCH
RRM_3
RRM_YTH1
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
113541737
NCBI-ProteinID:
XP_026794687
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGTEHLSVXPIHVRDTGLSVKDDMPRSDVNK
EYYTQNMEREIANSDGTRPVGALGKAPGASDMLLKLARTTPYYKRNRPHICSFWVKGECR
RGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLKRASTMPRLDPPEDKSITTL
YIGGLADTITDSELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLIVH
GHRLNVKWGRSQAARGKDGEKEGVTESGIRLEPVPGLPGALPPPPVSTDDISANYFNLAP
NTGPAVMNLGIPPPPGVAMPPPPGFGPPMYPSMDPMAPPMPPPMAMRPPGQVHYPSQDPL
RMGAHASRHGGS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccttaggctctaacacgtacaacagacagaattgggaggactctgacttc
cctattctctgtcagacatgtttgggagagaatccatacatccgaatgaccaaagaaaag
tatggcaaagagtgcaagatctgtgcccgtcccttcaccgtgttccgctggtgtcctggc
gtcaggatgcgctttaagaagacggaagtgtgtcagacctgcagtaagatgaaaaacgtt
tgtcagacctgccttctggatctggagtacggtactgaacatctctcagtttaaccgatt
cacgtcagagacacagggctgtccgttaaagatgacatgccgagatcggacgtgaacaaa
gagtactacacccagaacatggagagagagattgcgaactctgatggcacacggccagtc
ggtgcgctgggcaaagcccccggggccagtgacatgctattgaaactcgctcgcaccact
ccctactacaagaggaacagacctcacatctgctctttctgggtgaaaggagagtgccgt
aggggagaggagtgcccttacaggcatgagaagcccactgatccggatgacccgctggct
gatcagaacattaaggaccgctactacggcattaacgacccggtggctaataagctgttg
aagcgagcctccaccatgcctaggttagacccacctgaggacaagtctatcaccacactc
tacatcggaggcctagcagataccattacggattcagagctcaggaaccatttctaccag
tttggggagatccgcaccatcaccgtagtgcagaggcagcagtgcgccttcatccagttt
gccacgcgtcaggctgctgagatggccgcggagaaatccttcaataagctcatcgttcac
ggccatcgcctcaatgtcaagtggggcaggtcccaggcagcacgaggaaaagatggagaa
aaggaaggtgtgactgagagtggaatcagattggagcctgtgccaggccttcctggagca
ttgcctccaccgcccgtctccaccgatgacatctcggccaactatttcaacttagcacct
aacaccggtcctgcagtcatgaatttaggaatcccccctccccctggagtagccatgcct
ccacctccaggctttggccctcctatgtacccctccatggatcctatggcccctcctatg
ccacctccaatggccatgaggcctccgggccaggtacattatccttcccaggatcctctg
cgtatgggtgcccatgcgagtcgccacggaggctcctag
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