Pangasianodon hypophthalmus (striped catfish): 113541783
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Entry
113541783 CDS
T05759
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113541783
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113541783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113541783
NCBI-ProteinID:
XP_026794745
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MRAKAVSKEMGSMSPTSAHTSSFHCFQTGFCLVLSVFSVLFCVVITLRTSHLEHRMQFLE
SERLSVLSSAPPSLQANLSLWDAIEELVHKRLMEEAPKLRTPREVGQECSCPPGPPGRRG
RKGNPGTPGTPGRDGYPGPLGVDGKPGPPGPKGSQGMPGPKGDKGDQGDVGPRGPPAHTA
SAGLLSNQILTVKGDQGQAGPPGPPGPPGPSGPRGPPGTMGRDGPQGHPGEPGLPGKDGN
EGPRGPPGIKGDSGEPGMTGPQGPPGLKGEPGEPGDDGKRGMDGPPGIKGEKGDACASEL
QVKGKDAPGISENIDLSKRLQILQGPPGPPGPPGEQGIKGEMGSPGIPGSEGRQGSKGER
GDRGEPGATGEKGERGEMGQPGPAGAGGQKGEKGDSRIEDSLAQIIALPGPPGPAGPPGP
QGIMGHHGIPGQKGEPGEAMKGEKGDVGEKGPQGPRGLQGYPGSDGLVGLPGAKGEKGKQ
GEPGLDGFPGLRGEKGDKGGRGEKGERGSLGKRGLKGEKGEQGPPGLDQPCPVDRDGLPV
EGCWHK
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgaaggctgtgtcgaaggagatgggcagcatgtcacccaccagtgcccacaca
agctccttccactgtttccagactggcttttgtttagttttgtcggtattttcggtgcta
ttttgtgtcgtcataaccttaaggacgtctcacctggagcacagaatgcagtttctggaa
agtgagcgtctttctgtcctgagctctgcacctccatcactgcaggctaacctctctctg
tgggatgccatagaagaactcgtgcataagagactcatggaggaagcgcctaaacttcgt
acaccgagggaagtaggtcaagagtgctcttgcccaccaggacccccaggtagacgtgga
cgaaaagggaatcctggaactccaggaactccagggcgagatggctacccgggccctttg
ggtgtggatggtaagcctggtcctcctggtcctaaaggcagtcaggggatgccagggcca
aaaggagataagggtgatcagggagatgtggggcccaggggccctccagcacacactgcc
tctgctggcctgctcagtaatcagattcttacagtcaagggcgatcaaggtcaggctggg
cctccaggtcccccagggcctcctggaccatctggccccagagggcccccaggaaccatg
ggcagagacggaccccagggccacccaggagagccgggtcttcctggcaaggatgggaat
gagggtccaagagggccacctggtataaagggtgactctggagagcctggaatgactgga
cctcagggtcctccagggctaaagggagaaccaggtgagccaggtgatgacgggaaaaga
ggcatggatggaccaccaggcataaagggagagaaaggagacgcttgtgcttcagagctc
caggtaaaagggaaggatgcaccaggaatctctgagaatattgacctgtctaaaagatta
cagattttgcagggcccacctggtccaccggggcctcctggagagcaaggaataaaggga
gagatgggctctcctgggattcctggatctgaaggcagacagggttcaaaaggagaaaga
ggggatagaggagaacctggagcgacaggagaaaagggagagaggggagagatgggtcag
cctgggccagcgggagctggtgggcagaaaggggagaagggagactccagaattgaggac
agtctggctcagattattgcattgccaggccctccagggcctgcaggaccacctggccct
caaggaatcatgggccatcatggaatacctggccaaaagggagaaccaggtgaggcaatg
aaaggagagaagggggatgttggagagaaaggtccacaagggccacggggtcttcaaggt
tatcctggctctgatggattggtgggtctaccaggtgcaaaaggtgaaaagggaaaacaa
ggagagcctggattagacggtttcccaggcctccgaggagagaagggtgataaaggcgga
cgaggagaaaagggtgaaagaggctcattggggaaaaggggtctaaaaggagagaaagga
gagcaggggcctccagggctggatcagccttgtcctgtggacagggatggactcccagta
gaaggatgctggcataagtga
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