Pangasianodon hypophthalmus (striped catfish): 113542019
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Entry
113542019 CDS
T05759
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113542019 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113542019 (herc4)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
113542019 (herc4)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
HECT type E3
113542019 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Glyco_hydro_129
Motif
Other DBs
NCBI-GeneID:
113542019
NCBI-ProteinID:
XP_026795066
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIIVEPRKCEFFNGKVVRGVGCGRRHTVFLLGDGTVYTCGC
NDLGQLGHDKARKKPEQVMALDAQNIVAVSCGEAHTLALNDKGQVFAWGWASDGQLGLAN
IEECMRVPRTIKSLSEIHVVQVSCGYRHSLALSRRGQIFSWGQNRYGQLGLGKEGPCVLM
PQVIQSLQGIPFAQISAGGAHSFALTMSGAVFGWGRNKFGQLGLNDNKDRCFPSLLKTLR
SQRVVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNTINHEVNPRKVFELMGNVVTQVA
CGRQHTLAFIPSSGKIDSFGLGGNGQLGTRYTCNRISPAPVKGQWRAHSDPIPIDSEAEF
YCVKRIYAGGDQSFAHCHCPQNGSPPDDLRIQHCNQHVLSLNGDLIQKWLSHGHGRLSPE
ITVEIDDVFSSPSCLNGSFLSTSHPDHYHTSSKCPGVDMNMARLLFHRLIQPDYPHITQQ
IAASLERHLIPNLCSSPPDIEALRLYLILPECPLFKNPNTYITLTIPFAKAVIRLSNAPL
KVLGNWWSCLDPTVFHGLVELYIEVIVYLLRMQKMGISPSEHRTFTCFLSTCLKFLEILH
SVNERAGQIIQYDKFYIHELQNLVDIRSDYVTWIQHQMFSMGMDSQVTLCKYPFIFDAQA
KTTLLQTDAVIQMQMAVDQAERQNLSSLFLPGGMVESVNPCLILMVRRENVVEDTMEVLR
KSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSDK
TLEDIDLFHLIGVICGLAIYNLTIVELNFPVALYKKLLKKTPTLEDLKELMPVVGRSLQE
LLDYMDDDVEDTFCLNFTITVENFGETEVLELVPNGIYIPVNNHNRQDFVNAYVDYIFNS
SVAPLFNAFSAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWKELEKNTKYKGEYWPEHP
TIKFFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLVLVIQPTGGGENYLPVAHTCFN
LLDLPKYTSQETLKEKLLQAIEHNQGFNLA
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttggggaaatgcctcctatggccagcttggattgggtggaattgatgaagag
atcatagtagagccccgcaaatgtgaattctttaacgggaaggtggtgcgaggtgtaggc
tgtgggagaagacacactgtttttctgcttggagatgggactgtgtatacatgcggctgc
aatgacctgggacagctggggcatgacaaggcacgcaaaaaaccagagcaggtaatggca
ctcgatgctcagaacattgtagcggtatcttgtggtgaggcccacactcttgctctaaat
gacaaaggacaagtgtttgcatggggatgggcttctgatggacagcttggccttgccaac
atagaagaatgtatgcgtgtgcccagaacaatcaagagtttgtcagagatccatgttgtc
caggtctcctgtggttatagacattcccttgcactttctaggaggggacagattttttcc
tgggggcagaataggtatgggcagttaggactggggaaagagggaccttgcgtcttgatg
ccacaagtcatccagtctttacagggcatcccatttgcccagatctcagcaggaggtgct
cacagcttcgcactcaccatgtctggggctgtatttggttgggggcgaaacaagtttggc
cagttgggcctaaatgataacaaagatcgatgttttccatccttgctgaagacactcagg
tcccaaagggtcgtttatatctgctgtggagaggatcacactgctgcgttaacaaaggag
ggaggtgtgttcacatttggagcaggtggatatggtcagctgggacacaacaccataaac
cacgaagttaacccgcgaaaggtttttgaactcatggggaatgttgttacacaagtagct
tgtggtaggcagcataccctagcattcattccatcctctggcaagattgattcttttggt
cttggaggaaatggacaacttggcacacgttacacctgcaacaggataagtcctgctcct
gtaaaaggccagtggagagctcacagtgaccccataccaatagattctgaggctgagttc
tactgtgtgaagaggatttatgctggtggagaccagagctttgctcattgccactgtcct
cagaatggctctcccccagatgatctgcgaatacaacattgtaatcagcatgtcttaagc
ttgaatggtgacctcatacagaaatggctgagccacggtcatggaagactctcaccagaa
attacagttgagattgatgatgtattctcctcaccaagttgtctaaatgggagttttctt
tctacaagtcatccagatcattatcacactagcagtaaatgtcctggggtggacatgaac
atggctcgcctcctcttccacagactcatccagcctgattatccacatatcacacagcaa
atcgctgccagtttggagaggcatttgattcccaacctgtgcagctctcctcccgatatt
gaggcactgaggctctacctcatacttccagagtgtcctctgtttaaaaaccccaacact
tacatcacactcaccattccctttgccaaggcagtcatccgcctcagcaatgctcccctc
aaagtgcttggaaattggtggtcttgccttgatccaacagtgtttcatggacttgtggaa
ttgtatatagaggtgattgtgtatctgctccggatgcagaagatgggaatttcgccatct
gaacacaggacatttacctgcttcctcagtacctgtttgaaatttctggagattctgcac
tccgtaaatgagcgagctggccaaattattcagtatgacaagttttatatacatgaactg
caaaaccttgttgacatcaggagtgattatgttacttggatccagcatcagatgttctcc
atgggcatggattctcaggtcaccctgtgcaaatacccgtttatatttgatgctcaggca
aagaccacactgcttcaaactgatgctgttatccagatgcagatggctgtggaccaagca
gaaagacagaacctcagctctttattcctgcctggtggcatggtggagtcagtaaaccca
tgcctcattctcatggtgcgcagagaaaatgttgttgaggacactatggaggttttgcgg
aagtccaaaaatgttgattacaagaaacctctaaaggtgatctttgttggagaggaggct
gtagatgccggaggtgtgaggaaagaattcttcctcctcatcatgaaagaactgctggac
cccaaatatggcatgttcaggtattacgaggagtccagactcatctggttttcagacaag
acattagaagatatcgacttattccacctcattggagtcatttgtggtttggccatttat
aatctgactatagtggaactaaatttccctgtagccctgtacaagaaactcttgaagaaa
actccgactttggaggacctgaaggagctcatgcctgttgttggcaggagtctgcaagaa
ttattggactacatggatgatgatgttgaagatacattctgcttgaacttcacaattact
gtggaaaattttggtgaaactgaggtattggagctggtgcctaatggaatttacatccct
gtaaacaatcacaacagacaagactttgtaaatgcctacgttgactacattttcaactca
tccgtggctcctcttttcaatgccttctctgctggattccacaaagtatgtggagggaaa
gttctggagctttttcagccaaatgaactacaggccatggtcatagggaacaccaattat
gactggaaagaactagagaagaacacaaagtacaagggagaatactggcctgagcacccc
actatcaaattcttctgggaagttttccatgagttacctctggaaaagaagaaacagttc
ctgctgtttctcacagggagtgatcgaatccccatcctgggcatgaagagtcttgtcttg
gtcattcaaccaacgggaggcggagagaactatcttcctgttgctcacacttgcttcaat
cttttagatttgcctaagtatacaagccaagaaaccctcaaagagaagcttctacaagcc
attgaacacaatcagggcttcaatctggcatga
DBGET
integrated database retrieval system
