Pangasianodon hypophthalmus (striped catfish): 113542398
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Entry
113542398 CDS
T05759
Name
(RefSeq) uncharacterized protein LOC113542398 isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113542398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113542398
Membrane trafficking [BR:
phyp04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
113542398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
Motif
Other DBs
NCBI-GeneID:
113542398
NCBI-ProteinID:
XP_026795718
LinkDB
All DBs
Position
Unknown
AA seq
1603 aa
AA seq
DB search
MASVNRDEEQRWVPTHVQVLVIRARGLRAKGKHGTSDAYAVVQLGKEKYSTCVMEKTTEP
EWGEECSFELQPGVLENAGRDAHPAGTCDLTFTIMHRALIGLDVFLGQTVIALDKAFRER
ACMRNEWYKLHSKTGKKEKERGELQLTVQFTRHNLTASMYDLSMKDKPRSAFIRLRERMR
ARKRGGDEESSSAIVPGGYGALARMRGRLPSDGGGEEDYEDDEGGELRRSKMRSYFLHGR
LRKSSDTRSSTSLGSESSESSSRGGSLSPTAGISVVVSDLSNSPSNSSNLTADNSPEHTV
APSPLVSPVRYVFDEVCDLSIPVPHSLTTDSDAPILLPSVCVNGNPVETSPLTHQPPSLV
LQQPRPQTETEKESKKTPQTSPPEKGTPTQAQTAQSSNIKPQPSPEFQTQQPKVESKSKP
DLQFPAVGLLQKGSALSLSLQNLSRRKEEQQGGGPVDGRRWSFDKPGEEEKAAIAAALVH
TGLMADETVVETAVSESEIEGQGKKKRSLFSLARAEKEETAQAQLAAEGRHRGWFSSKDP
YSKPSQLVAPQTDCSPSTTLPLLSLSPTDLSEGMIYQYTNPFASASFISPANPFFSLLKQ
NPFFQELHTVTPLTPALPFLCSPAIFQTEVPASRPRIPTPPLHSVEAGNAKGALVDGSSH
NLTNSVCRTDTSDGSDKYTQWHDFNGDRLKLNSKISTQKMAVLPSSYLIEPTDPTHTCGE
GDLIVSDKANALVSLCNTTPACTLIVDALSDFEDEAYFMRYSTQKADLNNFVPQDATESA
SEFDSSLTHNSSIEFSELNALACPYPTLSNCTFNKDKVSAVSVCQINITPNEMSVLSVTP
ETSALNSESLDCLGLDEKYEHETVKCISSKRQTDDDTKGSVEIQKTSLPYCNFDILEASS
IVTSESPSSGHNVLLSKSLPKGQRSFKSDGDIGTGDVELKESAIKEKTCLDVHPATYPLG
MSIPLGPSDSVLQGMTMEKDAVGNPGCRSLDRSEVSFVGEGFDIKNVKILMDSSSTDTSN
MSFTKEKVSDSPPNPSKGSFEVDRLPETLSALCGVETPNGSRETLSLALSPGYMLSHSLY
ESVDSEQYLTCMSQHSSPTISQLSPVASLESDNFQEGKPKSGSSQEVLTTNDQSQRTISE
LQQDPAEIFQDALPKIGGVSQYDPSNLPVSLTLLPKPVSSQNTLAKSDIVKKAITGTVTN
GSIQNYDPPMDSMMNHDLLHERIPDTFELMRTRGEEELLMLDPQTFMDNDICSTEPYQSR
HVQRDGALEDLEIITDFCQSTENVCVSDFVYEPTSSITQDLVMTDLLLENMFVAQHAVTH
SVGTSPVTHPVPRETCTNMELCPDSIKASQISKNTQATMTAAFIPQGEHLHSAIHWSTVQ
PPLPEPSSLDRLTSGHDLLMSSPLSLLDLSPLASSTPHVAVDINSLPLSSFPMPSAPARS
LPHTALAAAALPPVFAASHDSFPQEEHQVACHLSSPHPVKPLTPPDEKRSEGRSVLEKLK
STIHPGRGQQGDQESEKKLLVEGGGSYYHLNHSELVSLLLQRDAELQQEKKEYERRGLLL
EKREVEIKKMKVLIRDLEDYIDTLLVRIMEQTPALLQVRSKMK
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggtaaacagggacgaggagcagcgatgggtgccgacgcacgtgcaggtgctg
gtgatccgcgcccgcgggctccgcgccaagggcaagcacggcacgagcgacgcgtacgcc
gtggtgcagctcggcaaggagaagtactccacatgcgtgatggagaaaaccacggagccc
gaatggggcgaggagtgctcattcgagctgcagcctggagtgctggagaacgcgggccgc
gacgcacacccggcgggcacctgcgacctcaccttcaccatcatgcaccgcgcgctcatc
ggccttgacgtgttcctgggccagaccgtgatcgctttggacaaggcgttccgtgagcgt
gcgtgcatgagaaacgaatggtacaagcttcattctaaaactggcaaaaaggagaaagaa
agaggggagcttcagctaacagtgcagtttactcgccataacctgacagccagcatgtat
gacctctccatgaaggacaaaccaaggtcagccttcattaggctgcgtgagcgcatgcgt
gcccggaaacgtggtggagatgaagagtcttcctcagccattgtgcctgggggttacggg
gcattagcgcgcatgcggggccgtctgccaagtgatggtggtggagaggaagactatgag
gatgacgaaggaggggagttgaggaggagtaaaatgaggagttacttcctccatggaaga
ttacggaagtcttcggacacgcgttctagcacgtctctgggctccgagagcagcgagtca
tcttccagagggggcagccttagcccaactgctggcatcagtgtagtggtctctgacctc
tccaattcacccagcaacagcagcaacctgactgcagacaacagcccagagcacacagta
gccccctcaccactagtctctcctgttagatatgtgtttgatgaggtctgtgaccttagc
atcccagtgcctcattccctgaccactgacagtgatgcccccattctcctgccctctgtc
tgtgtaaatggaaatccagtggagacatctcctcttactcatcaacccccctcactggta
ctacaacaacctaggccacagacagagaccgaaaaagaatcaaagaaaactcctcagaca
agcccaccagagaaaggcacacctactcaggcccaaacagcccagtcctcaaatatcaaa
cctcaacctagtccagagtttcagactcagcagcctaaagtggagtctaaatccaagcct
gacttgcagttccctgcagtagggctgctacagaagggttctgcactctctctgtccttg
cagaacctctctcgccgtaaagaggagcagcagggcggagggcctgtagatggccgacgc
tggtcctttgacaaaccaggagaggaagagaaggcggccattgctgcagcactggtgcat
actgggttgatggccgatgaaacagtggtggagacagctgtgtctgaaagcgagatagaa
ggtcaaggcaagaagaagcgaagcttgttctcacttgcgcgggctgaaaaagaggaaact
gcccaagctcagctagctgcagagggaagacacagaggctggttcagttctaaggatcca
tacagtaaaccaagccagctggttgctcctcagacagactgcagccccagcacaaccctt
ccccttttatccttgtcccccactgacctctcagagggaatgatttaccaatacactaac
cccttcgcttccgcctcattcatctctcctgctaaccctttcttttcactacttaagcag
aatccatttttccaggagctgcataccgtcactcctttaacacctgctttgccctttctc
tgtagcccagccatctttcaaactgaagtgcctgcctccagaccaagaatccccacccct
cctctccactcagttgaagctggaaatgcaaagggagccctagtggatggatcatcacat
aatcttacaaattctgtttgcagaactgatacttcagatggctctgacaagtatactcaa
tggcatgattttaatggtgatagactgaaactaaactcaaagattagtactcagaagatg
gccgtccttccttcttcctacctgattgaaccaactgatccaacacacacatgtggtgaa
ggtgacctgattgtgtctgataaagctaatgccctagtaagtctatgtaatacaacccca
gcatgcactttaattgtagatgcactttctgactttgaagatgaagcttattttatgcgc
tatagtactcagaaggcggatctcaataattttgttcctcaggatgccacagaatcagct
tctgaatttgactcctcattgactcataactcaagcatagagttctctgaactcaatgct
ctagcatgcccttaccctacactttcaaactgcacatttaataaggacaaagtcagcgca
gtctcagtctgccaaataaatattacaccaaatgaaatgtcagtgttgtctgtgactcct
gaaacctcagcactcaattctgaatcattagattgtttaggcctggatgaaaagtatgaa
catgaaacagtcaaatgcatttcctccaagaggcagacagatgatgacactaaagggtct
gtagaaatccagaagacatctttgccttactgtaactttgatattctggaagcatcttcc
attgtaacatctgaatctccaagcagtggtcataatgtcctattgtcaaagtccctccca
aaaggacagaggagcttcaaatcagatggtgatattggaacaggagatgtagaattgaaa
gagtctgccattaaagaaaaaacatgcttggatgtccatccagcaacatatccattaggg
atgtccattcccttaggacctagtgactctgtgttacaaggaatgacaatggagaaagat
gctgtaggtaatccaggttgtagatcattagacagaagtgaagttagttttgttggggaa
ggttttgatatcaagaacgtaaagattcttatggattcttcttctacggacacaagcaac
atgtcatttacaaaggagaaagtcagtgattcaccacctaatccatctaagggaagtttc
gaggttgaccgtttacctgaaaccctcagtgcactttgtggggtagagacaccaaatggt
agcagagagacactatctttagcactgtctcctgggtatatgctctcccatagcctgtat
gagagtgtagactctgagcaatacctcacctgtatgtcacagcacagttcccctaccatt
tcccaactctctccagtggccagtctggaaagtgacaattttcaagaaggcaagccaaaa
tctggttcatcccaggaagtcctgacaacaaatgaccaatctcagaggaccatttcagaa
ctacagcaagacccagctgagatttttcaagatgctttgccaaaaattggaggtgtttct
caatatgatccttcaaacctaccagtatctcttaccttattgccaaaacctgtctcttca
cagaatactttagcaaaaagtgacattgtaaaaaaagccataacaggtactgttacaaat
ggatcaatacaaaattatgatcctccaatggactcaatgatgaaccatgatttgctacat
gagagaattcctgatacctttgagctgatgagaacaaggggagaggaagaacttttaatg
ttagatcctcaaacatttatggataatgatatttgctcaactgagccttatcagtcccgc
catgtccaacgtgatggtgctctagaggatctggagattatcacagatttttgtcagtcc
actgagaatgtgtgtgtctctgattttgtatacgagccaacctctagcattactcaggac
ttggttatgacagatttgctcctggagaacatgtttgtggcccagcatgctgtgacacat
tctgttggcacaagccctgtcacacaccctgtgcctagggagacttgcacaaacatggaa
ttgtgtcctgattctattaaagcatcacaaataagtaaaaatacacaagcaacaatgact
gcagcttttattccacaaggggagcacttgcacagcgctatacactggtctactgttcaa
ccacctctccctgaaccttcatccctggaccgactgacttcagggcatgatctcttgatg
agctcccccttatctttgcttgacctctcaccactagcctcatctacaccacatgtagca
gtagatattaatagtctgccactgtcctcctttcctatgccctctgctccagcaagatca
ctgccgcatactgcactggctgctgccgctcttccccctgtatttgctgcatcgcatgat
tctttccctcaggaagaacatcaggtagcctgtcacctcagcagtccgcatccagtgaag
cctttaacacctccagatgagaagaggtcagaagggcgctctgtgctggagaagctcaag
tccaccattcatccaggaagaggtcaacaaggagaccaggaatctgagaagaagctcttg
gtggagggtggaggctcctactaccatctgaaccacagtgagctggtgtccctcctgctg
cagcgggatgccgaactccagcaggagaagaaggagtatgagcgccgtggcttgttgcta
gagaagcgggaggtggagattaagaagatgaaagttttaatccgagatctagaggattac
attgacactctgctagtccgcattatggaacaaacgcctgcactgttgcaagtacgttcc
aaaatgaaatga
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integrated database retrieval system
