Pangasianodon hypophthalmus (striped catfish): 113542618
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Entry
113542618 CDS
T05759
Name
(RefSeq) rab5 GDP/GTP exchange factor-like isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
113542618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113542618
Membrane trafficking [BR:
phyp04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
113542618
Protein recycling
Other Rab GTPase associated proteins
113542618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
zf-A20
DUF5601
EIAV_Rev
Motif
Other DBs
NCBI-GeneID:
113542618
NCBI-ProteinID:
XP_026796054
LinkDB
All DBs
Position
Unknown
AA seq
453 aa
AA seq
DB search
MSARQTGEGVDLRRMWAGQKRGIHVTQAELLCKDGCGFYGNPAWQGYCSKCWRKRTRKTE
TSKEDHGLHEDGSSQLSFSKTEEKKNAEKGRRSNTIMRLFWGSSSPPRQESPEGQEAALK
AFQSLEPGDFPGFLKLLHKPSSQRLHSRCSAFLNTIEAYRDLPVQKQSDLVQDFYQNIAV
HFSGLSEPQVSQMMEHVEKLIMTRLHKWVFCHDSCDDEQKDLTLQRRIKSLNWVTPEMLR
VPFPQGGSDTSDPYLPAITAIIEMDAKRAPQDKLACLSKCSQHVFQALASENRQPANADD
FLSGLIYVVLRANPPRLHSNINYIVRFGLPHSLMAGESGYYFTNLSCTVAFIEKLDGPAL
NLTPEEFNKYMQGRRAPSGPTECAGQRRAQENREQLEKIKNRQEKVEQGVRALQEQLDLW
VRSVQDQIDEVRAQSVLVLKDDVAEPQPGETVC
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcgccagacaggtgaaggagtggatctgaggaggatgtgggccgggcagaag
cgagggatccacgtcacacaggctgagctgctctgcaaagatggctgtgggttttacggc
aacccagcctggcagggatattgttccaaatgctggagaaagaggacacgcaagaccgaa
accagcaaagaggatcatgggctccatgaagacggaagttcccagcttagcttttctaaa
accgaagagaagaaaaatgcagagaagggtagaaggtccaacactattatgcgcctcttc
tggggaagttcttcaccaccacggcaagagtctcctgaaggccaggaagcagccctgaag
gccttccagagcctggagcctggcgatttccccggcttcctcaaactgctgcacaagccg
tcctcacagcgtctgcactcccgctgctcagccttcctcaacaccatcgaggcttaccgc
gaccttcctgtacagaagcagtcagacctggtgcaggatttctaccagaatattgcagtt
cacttcagtggtctgtccgagccgcaggtttctcagatgatggaacatgtcgagaagttg
atcatgactcgtctccacaagtgggtcttctgccatgacagctgtgatgacgaacagaag
gatctaacactccagagaaggatcaagtctttgaattgggtcactcctgagatgctgcgt
gtgccttttccacagggtggctcagacaccagtgacccgtatttacctgcaattacagcc
atcatagagatggacgccaagcgtgcgcctcaggataaactggcctgtttgtccaagtgc
agtcagcacgtttttcaagcgctcgcctcagagaacaggcagccggcgaacgcagacgac
ttcttgtccggtctgatttacgtcgtactgagggccaacccgccccgtttgcactcgaac
ataaactacatcgtccgctttggcctgccacacagcctgatggcaggggagagcggctac
tactttacaaacctgtcgtgcactgttgccttcattgagaagctggacggcccggcgctt
aacctcaccccggaggagtttaacaaatacatgcagggccgaagagcgccttccgggcca
acagaatgtgctggccagaggagagcccaggaaaaccgagagcagctggaaaagataaag
aaccgacaggagaaggtcgaacaaggtgtacgtgctcttcaggaacagctggatttgtgg
gtacgttctgtgcaggaccagatcgatgaagtcagggctcagtcggtgttggtcctgaaa
gacgacgtagctgagcctcagcctggagagactgtgtgctga
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