Pangasianodon hypophthalmus (striped catfish): 113542728
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Entry
113542728 CDS
T05759
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
113542728 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113542728 (atrx)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113542728 (atrx)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
113542728 (atrx)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
113542728 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113542728
NCBI-ProteinID:
XP_026796224
LinkDB
All DBs
Position
Unknown
AA seq
2076 aa
AA seq
DB search
MSTESGRSSKLTALVTKLHEFLDHSPEEETAASQVNEISSGKMASSDSNINDEIMEKPSC
STEVPKATPRSKRKPAVVTKHTAVNEPESADECEQDCVADDTNDATIDMEEIPEDVVIVK
PEPVNNEGKDEFKGPEFRNKGGSKVKEESQRRRPDEHLQEIRCSRVNCTACGQQVNHFQR
DSVYQHPVLKVLLCKSCFKYYMSDDISKDDDGMDEQCRWCAEGGNLLCCDYCSNAFCKTC
ILRNLGRKELSGIMNDDDKWRCYVCQPEPLQDLVVACENVLRNLECMKKPKGDHDKPRRD
GMKHKQGKIKNTSLNGKDANSDGSGTLTFSYKTLKVPKELVKKTKKLIETTNGLNSTFVQ
FIQQEPVYHGDNTVRHRHLKAFRSVLADLKKAHATLEEALDKEFRDLEVQNGEGNGLADN
ANVANAVPKSGVDQVNDDQVVLDGTTNQVPAASEDYVDEENVIPADVETMEEAVPSADDP
EDGFIEDEANANVVKSEPDCEDDGSAAGEASLDKDIVSVPTSVPEELFEMVESLSDCVKQ
EGEKDSLDSTDSTSSKTSLSDRKSTESGKRSEKMNKKLVVKLTPIPLKITIKKDESKTQP
KEKDGALSPDESRRSPRMKTTPLRKSSEGRSKSRSDGTRADDEDCDTSQIPVSVGMSDSD
SDEVPEVLRQVEAMEASSDEQEAEPNGKAVGKNEAKKSTEPSEKTAKRKLIASSSDSDEN
VKSSTAKKQAAKKRKPKESDSSNHDSDLEKEIKSLSKLSTTKKSSKRGKKQANESKKEED
ESKKEEDESKMEEDESKKEGKKGPKRSFERKRRPQKGKENATRDSSSSDEEEEQAADSGE
DSSDQQKIKPILESVMPHMDAFHQSSGDEAQVKQDPSQLVDDDDDPENSCGILDYDFPSL
ELRGPNMFHHGDDSSSEDEDCKKETEERSSPKAKNDGSSEGEEEEEEDSDSGSEVDVKKA
GRRHKLLRKKLTLSEGESDNEKPAKSNKEVKRRGRRKVSSDDSDSDFKRSGSGSGSESAM
SEALSEDDEDSKSNKRRTRSSKKAEKDSERSYQKEKKKKRRRIKVQDDSSSNKSAEEGEE
EGGEGDEKGTPKGRKKIRKILKDDKLRSETQNALKEEEERRKRIAEKERLREKLRETIVV
EESSQIACPITTKLVLDEDEETKEPLVQVHRNMVTKLKPHQVDGVQFIWDCCCESVKKTQ
KSAGSGCILAHCMGLGKTLQVVTFLHTVLLCEKLDFSTALVVCPLNTVLNWLNEFEKWQE
GLQDEESLEVTELATVKRPQERAYALQRWHEDGGIMIIGYEMYRNLTQGRNIKSKKLKET
FQKTLVNPGPDFVICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNNLIEYHCMVN
FIKENLLGSVKEFRNRFINPIQNGQCADSTMVDVRIMKKRAHILYEMLAGCVQRRDYTAL
TKFLPPKHEYVLAVRMMPVQCKLYRYYLEHFTGVGSALEGGRGRAGTKLFQDFQMLSRIW
THPWCLQLDYISKENKGYFDEDSMDEFIASETEESSMSLTSEDEKPKRKKKRGKGKGESS
DKSDSDDVEVIKEWNTSSRGGNPEGRNRAEPVEEVRASNSGPGSPSPDWYKEFVSEPDAE
VLEHSGKMVLLFEILRMAEDVEDKVLVFSQSLISLDLIEDFLELACRAKEEGKPSPYKGE
GKWFRNIDYYRLDGSTNAMTRKKWAEEFNDTSNVRGRLFLISTRAGSLGINLVAANRVII
FDASWNPSYDIQSIFRVYRFGQLKTVYVYRFLAQGTMEEKIYDRQVTKQSLSFRVVDQQQ
IERHFTMNELTELYTFEPDQLDDPSEKKSKRSTPMLPKDPFLAELLHNFKDQIVGYHEHD
SLLDHKEEEALSEEERKAAWAEYEAEKKGLSMRFNQPSYPSVGIGGSSNYFPFNVAALAS
MSNQQLEDLINQGRQKVLEATNALKALPREPLEDIVGQVWKENPNLSEAQVQGMALARQA
TIDMELKHREAVYRDILNKQQTLMMYVQKVIANRKVQEQQLALARQGLLMNQLAIQNGIA
GGMSQMDLLGLYQQLGALQGLPTSQIGKNPGPSKGL
NT seq
6231 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaaagcggcagatccagcaagctgactgcactggtgacaaaacttcatgag
ttcttggatcattctccagaggaagaaactgctgcatctcaagttaatgaaatctccagt
ggtaaaatggcctccagtgactcaaacatcaatgatgaaataatggaaaagcccagttgt
tccactgaagttccaaaggccacgccacgctcaaaaaggaaacctgcggttgtaacaaag
catacagctgtgaacgagcccgagtctgcagatgaatgtgagcaagattgcgtcgctgat
gatactaatgatgccaccattgatatggaagagataccagaagatgtagttatagtgaag
ccagaacccgtcaacaatgaaggaaaagatgaattcaaaggcccagagttccgtaacaaa
ggagggagcaaagtcaaagaagagagtcagaggaggcgtcctgatgagcaccttcaagag
attaggtgctcaagagttaattgcactgcgtgtgggcagcaagtcaatcatttccagagg
gattctgtgtatcagcatcctgtactcaaagttcttctctgcaaatcctgtttcaagtat
tacatgagtgatgacatcagtaaagatgacgacggaatggatgaacagtgcaggtggtgt
gccgaaggaggtaacctcctttgttgtgactattgtagcaatgcattttgcaaaacatgt
attctacgtaaccttggaaggaaggagctctctggaatcatgaatgacgacgataagtgg
cgttgctatgtgtgccaacctgagccacttcaagacctcgttgtagcttgtgagaacgtt
ctgagaaacctggaatgtatgaaaaagccaaagggagaccatgacaaaccgaggcgtgac
ggtatgaagcacaaacagggcaaaattaaaaatacatctctaaacggaaaggatgctaat
tccgatggatcagggacactaaccttttcctacaaaacattaaaggttccaaaagaactg
gtcaaaaagacaaagaaactgattgagacaacaaatggcttgaacagcacttttgtgcaa
ttcatccagcaggaaccggtctaccatggggataacactgtccggcacaggcatttgaaa
gcattcagatctgttttggccgacttgaaaaaggcccatgcaactttggaggaggcgcta
gacaaagagttcagagacctagaggtccagaacggagaggggaacggattagcagataac
gcgaatgtagccaacgcagtccccaaatccggtgttgaccaggttaacgatgatcaggtg
gttctggatggcaccacaaatcaggttccagcggcgtccgaagactacgtggacgaggaa
aacgtaattccggctgacgtagaaacgatggaagaagcagtaccctcagcagatgatcca
gaggatggatttatagaagacgaggcaaatgcaaatgttgttaagagtgaacctgactgt
gaagatgatggttcagcagctggtgaagcctctcttgacaaagacattgtgtctgtacca
acgtctgttcccgaggaactcttcgagatggttgagagtctttcagattgtgtaaaacaa
gagggtgaaaaggactctcttgattctaccgatagtacatcaagtaagacctcgctctct
gacagaaagtcaacggaatccggtaagaggtctgaaaagatgaataaaaaacttgttgta
aagctcacccccattcctcttaaaattaccattaagaaagatgaaagcaagacgcagcca
aaagagaaggatggtgctctgtcaccagacgaaagcagacgttcccccaggatgaagacc
actcctctacgcaaatcgtctgaagggaggagtaagagtaggtccgatggtacaagagcg
gatgacgaagactgcgacacttcacagataccagtttccgtcggtatgtcggactctgac
tcggacgaagtccccgaggtcctgcggcaggtagaagccatggaggcaagctcggacgaa
caggaggcggagcctaacggcaaggctgtgggcaagaatgaagcgaaaaaatcaaccgaa
ccctctgagaagacggcgaagcgcaagctcattgcgtcgtcctcagattcggatgaaaat
gttaagtcatcgacagcaaagaaacaagctgccaaaaaaaggaagcctaaagaatctgat
tcgtcaaatcatgactcggatcttgagaaggagatcaagagtttaagcaagctcagcact
acgaagaaatcatctaaacgaggcaagaagcaggcgaatgagagcaagaaggaggaggat
gaaagcaagaaggaggaggatgagagcaagatggaggaggatgagagcaagaaggagggt
aaaaaaggtccaaagagatcgtttgagcggaaacgaaggccacagaaaggtaaagaaaat
gccacaagagattcatcctccagtgatgaagaggaggagcaggcagcagactctggagag
gacagcagtgatcagcagaagataaaacctattctcgagtctgtgatgccccacatggat
gctttccatcagtcatcaggagatgaagctcaagtgaagcaggacccctctcagctggtt
gatgatgatgacgaccctgagaatagctgtgggattttggattatgacttcccgtcactg
gagctaaggggcccaaacatgttccatcatggagatgacagctcttcagaagatgaagac
tgcaaaaaagaaacagaggaaaggtcttcaccaaaagcgaagaatgatgggagctctgag
ggtgaagaagaagaggaagaggactcagactctggttctgaagtggatgtgaaaaaggcc
gggcggagacacaagctgcttcgcaagaagctgacgctaagcgagggcgagtctgacaat
gagaaaccagccaagagcaataaagaggtcaagagaagaggaagacggaaagtgagcagc
gatgactctgattcggacttcaaacggtcaggctctggttcgggaagtgagtctgcgatg
agcgaggcattgagcgaggatgatgaggacagcaagagcaacaagcggagaacacgatcc
tccaaaaaagctgagaaagatagcgaaaggagttaccagaaagagaagaagaaaaagcgg
cggcggattaaggttcaagacgactcctccagcaacaagagtgccgaggaaggggaagag
gaagggggagaaggggatgaaaagggcacaccaaagggccgcaagaagatccgcaagatc
ctgaaagatgacaagctgcgctctgagacccagaatgctttgaaagaggaagaagagagg
cgtaaacgaatagctgaaaaagagcggctgagggaaaaactaagagagacaatcgtggtg
gaggaatcctcgcagatcgcctgtcccattactactaaactggtgttggatgaggatgaa
gagaccaaggagccactcgtccaagtccacagaaacatggtgaccaagctgaagccccat
caagtggatggtgtgcagttcatttgggattgctgttgcgagtctgtgaaaaagactcaa
aagtcagctggctctggctgtatcctcgcacactgcatgggtctgggcaaaacccttcag
gtggtgacgtttctccacactgtgctcctgtgcgagaaactcgatttctcaacggctttg
gtggtgtgtccccttaacaccgtcctcaactggctgaacgagtttgagaagtggcaggag
ggcttgcaagacgaggaaagcttagaggtgacagagttggccacggtgaagaggcctcaa
gagcgagcatacgccctgcagcgctggcatgaagatggcggcatcatgatcatcggttac
gaaatgtaccgcaacttaacacaaggccgcaacatcaaaagcaaaaagcttaaagagaca
ttccaaaagaccctcgttaacccaggtccagactttgttatttgcgatgagggccacgtg
ttgaagaacgaagcctcggctgtgtccaaagccatgaactccattaagactcggcgaaga
gtggtgctgactggaaccccgcttcagaacaacctgattgagtaccactgcatggtaaac
ttcatcaaagaaaacttgctgggctcagtgaaagagttcagaaaccgtttcatcaacccc
atccaaaatggccagtgcgctgactccacgatggtcgacgtgcgtatcatgaagaaacga
gcacacattctctacgagatgctggcaggatgcgtccaaagaagagactacactgcactt
actaagttcctgccacctaaacatgagtatgtgctcgcggtgcggatgatgcctgtgcag
tgcaagctctacagatactatctggagcactttacaggtgtcggttctgccttggagggg
ggaagaggccgtgcaggcacaaagcttttccaggatttccagatgctcagcagaatctgg
acacatccttggtgtctccagctggactatatcagtaaggaaaacaaggggtactttgat
gaggacagcatggatgaattcattgcgtctgaaacggaggagtcatcaatgagtctgacc
tctgaagacgagaaacccaaaaggaagaagaagcgggggaaaggcaaaggtgagagctcg
gacaagtccgacagtgacgatgtggaggtgattaaggagtggaacacgagctctcgtgga
ggaaacccagaggggcggaacagagccgaacctgtagaagaagttcgtgccagcaactca
ggccctggcagcccgtctcctgactggtacaaggagtttgtgagcgaaccggatgccgag
gttctggaacactccggaaaaatggtgcttttgtttgaaattctgcgaatggcagaagat
gtggaagataaagttttggtgttcagtcagtcactcatttcactggacctcattgaggat
ttcctggagttagcatgcagagccaaagaggagggtaaaccctctccttacaaaggtgag
ggcaagtggttcagaaacattgactactaccgactggatggttctactaatgccatgact
aggaagaaatgggctgaagaattcaatgacaccagcaacgttcggggacgtctttttctc
atctctacaagagctggctcgctagggatcaacctagtggcagcaaaccgggtcattatc
tttgatgcctcatggaacccatcttatgacattcagagcattttcagggtgtaccgcttt
ggccaactgaaaacggtgtatgtctacaggtttttggctcagggaaccatggaggagaag
atttacgacaggcaggtgaccaaacagtccctgtcattccgtgtggtggaccaacaacag
attgagcgccacttcaccatgaatgaactgactgaactctacacctttgagccagaccag
ctggatgacccatcggaaaagaaaagcaaaaggtccacacccatgttacccaaggaccct
tttctggccgagctacttcacaacttcaaagatcagattgtgggttaccatgagcatgac
tccctactggaccacaaagaggaggaggctttgagtgaggaggaacgtaaagccgcctgg
gctgagtatgaggccgagaaaaagggtctctccatgcgcttcaaccagccgtcatatcct
tctgtaggcattggaggatcgtcaaactacttccctttcaacgtggcagctctggcctcc
atgtccaaccagcagctggaggacctgatcaaccagggtcgacagaaggtgttggaggcc
accaacgctctgaaggctttgccccgggagccgcttgaggacattgtcgggcaggtgtgg
aaggagaatcccaatctgtcagaggcccaggtgcagggcatggctctggccagacaggca
accatcgacatggagctgaaacacagagaggccgtgtaccgagacattctcaataagcag
cagacgctgatgatgtacgtgcagaaggtgatcgccaatcgcaaggttcaggagcagcag
ctggcacttgccaggcaggggttgctgatgaaccagctggccattcagaacggcatcgct
gggggaatgagtcagatggacctgctgggcctgtaccaacagctcggtgccctccagggt
ctgccaacctcccagataggcaagaacccagggccttcaaagggcctgtag
DBGET
integrated database retrieval system
