KEGG   Pangasianodon hypophthalmus (striped catfish): 113542890
Entry
113542890         CDS       T05759                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040  Spliceosome
phyp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113542890 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    113542890 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113542890 (prpf19)
   04121 Ubiquitin system [BR:phyp04121]
    113542890 (prpf19)
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113542890 (prpf19)
Enzymes [BR:phyp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     113542890 (prpf19)
Spliceosome [BR:phyp03041]
 Complex B
  Other components
   Prp19 complex
    113542890 (prpf19)
 Complex C
   Prp19-CDC5 complex
    113542890 (prpf19)
Ubiquitin system [BR:phyp04121]
 Ubiquitin ligases (E3)
  U-box type E3
   113542890 (prpf19)
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    113542890 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_EIPR1 NBCH_WD40 Beta-prop_WDR41 Beta-prop_TEP1_C PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_SPT8 U-box Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N PROPPIN Beta-prop_DCAF12 Cytochrom_D1 Tricorn_2nd zf-Nse ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 113542890
NCBI-ProteinID: XP_026796529
LinkDB
Position
Unknown
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQVAPASQPAAVGAGGEPMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASIPGILALDMCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVTSVIYHPSQSLVFSASPDSTIRVWSLAAGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHSGLVT
GVAFGEHAQFLASTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgtgcaatctcaaacgaggtaccggagcacccatgcgtctctccggtc
tccaaccaggtatttgaacgccgtctcatcgagaaatacatcgccgagaatggagccgat
cccattaacgggcagcctctgtccgaggagcagcttgtcgacatcaaggtctctcacccc
attcgaccaaaggcaccctctgccactagcatccctgccattctgaaatcacttcaagat
gagtgggatgcagtgatgctgcacagtttcacactgcgccagcagttgcagacaacacgc
caggagctgtcacacgcactgtaccagcacgatgccgcctgcagggtcattgctcgtctc
acgaaagaggtcactgctgccagagaagccttggctacactcaaacctcaagccggattg
gttgctccccaggttgctcctgcctcccagcccgctgccgtgggtgcgggtggtgagccc
atggaggtcagtgaacaggtgggaatgactccagagatcatccagaagctgcaagacaag
gccactgtcctgaccaccgaaagaaagaagaggggaaagacagtgccagaagagctggtc
agagccgaggatctcagcaagtatcgccaagtggcctcccatgctggtctgcacagtgcc
agcattcctggaatccttgctctggatatgtgtcccacagacaccaacaaagtgctcaca
ggtggcgcggataagaacgtggtggtgtttgatcgccgagaggagcagatcgtggccact
ctcaaaggccacaccaaaaaagtcacctctgtcatctaccacccatctcagtcgctggtg
ttttcggcgtccccggacagcaccatccgtgtgtggtcactcgcagcaggaaactgtgtg
caggtggttagagctcatgaggcaggagttactggcctctccctgcatgctactggagat
tacctgctcagttcatctgaggatcagtactgggccttctctgatatccaaactggtcgt
gttctcaccaaagtcactgatgagacagctggatgtgcactgacctgtgctcagttccac
cctgacggcctgattttcggcactggtacggcagactcgcagattaagatctgggatctg
aaggagcgcaccaatgtggccaacttccccggtcactctggcccagtcaccgccatcgcc
ttctccgagaacggatactaccttgctactggtgctcaggatagctctctgaaactgtgg
gatctgaggaagctgaagaactttaagactattactttggataataactatgaggtgaag
tctctggtgtttgatcagagtggtacatatctggctgttggagggtctgatattcgagtc
tacatttgcaaacagtggtctgaggttctcaacttcaccgatcactcaggtttggtgaca
ggtgtggcgtttggtgagcatgctcagttcctggcgtctactggaatggacagaagcctc
aagttctacagcctgtag

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