Pangasianodon hypophthalmus (striped catfish): 113543149
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Entry
113543149 CDS
T05759
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
phyp04040
]
113543149
Ion channels [BR:
phyp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
113543149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
DUF5798
Motif
Other DBs
NCBI-GeneID:
113543149
NCBI-ProteinID:
XP_026797008
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MCPSRSQPKFTHEYQFLMDMDGNGCTSMNVFKWALEGNVPALEGDSNNLSMRDDGGAAPL
HYAASKGHIRVINLIVQLAGSQELDIVDDEGNTPLHWAVQQDQSGSCLALLSLGANPNIL
NKAALSPLHLAVSLRHNHIVEQLLTHRETNVNLEGDLGNTPLTLAASVDNHEALLILHRH
GAKLCCQNKLGHLAIHAAAFAGAKRSMEVILQKGEEKGVPIERHINYVDKSISSPLHLAV
RGGNLEVIKLCIAHGAKIDQQQCDKSTALHFACTQGATEAVKVMLQAYERVCDIINITDG
AFQTPLHKAAIFDHYELVEYLISQGADIDFPDCKGHSPLLLATSCGAWRTVNLLLSHGAD
LTAKDKAGCNFLHLAILQPRGLKNLPAEVLQHEHVRELLNDEDSEGCTPLHYACRLGIPD
SVKNMLGLEVSLDQKSKQKKSALHFAAEYGRINTCHRLLETMTDTRLLNEGDENGMTPLH
LASRGGHVKVVELLLRKGALFHSDYKGWSCLHHAAAEGYTQTMDSLLTSNIKLLDKTDGD
GNTALHLAARAGHVAAVRLLLSRGAQILLNRSDASFLHEAIHNGRKDVTCAVIDSDRCEE
AITTFKVNSAKRCTVLDMIEFLPECFKHLLDTCIKESEEDVNSCSYYLEYNFQWLQQPKQ
YAKDREKTEKEDEYKPLAALNAMVEFNRVELLTHPVCKKYLEMKWHAYGVKAHLLNMTMY
TLGVFPLTYLIVNLRPNLSVEKNVTIKMVTNTLDKQCYFITTCMFLVLAMNLYAVGKEVV
QMFQQRLKYLQDVSNVTDWAATICSLLFVLPLLLNVKKSWHWQAGALASLASWVNLLLYL
QRFQRFGIYVVMFREICKTLLSIILIFVYLILAFALAFYALMIEQKHFGRLFLSMMQTFA
MMAGEINYQDNFLKPFMARHLPFPILTYFIFVWFVLLVPILLMNLLIGLAVGDIAEVKNN
ACLKQIGMQIELHTNLEERLPSWFMKRVDQISVKEFPNKCYKGKRWFFCGGEVNKVRARL
SSSTRQCTQLERELTKQKHRLKDLSESMEKQHNLLKLIVQKMEISSEAEENDGPRVLRDF
THKLSAKSKWGPLLRAVTAKRK
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccgtcccggtctcagccgaagttcactcacgaataccagtttctgatggacatg
gacggaaacggctgcacgtcaatgaacgtctttaagtgggctttggagggcaacgtcccg
gcactggagggcgactcgaataacctgagcatgcgggacgacggcggcgccgccccgctt
cactacgccgcctccaaaggccacatccgagtcatcaacctcatcgtacagctcgccggc
tctcaggagctggacattgtggatgatgaaggaaacactcctctgcactgggccgttcag
caggatcagagtggaagctgtttggctctgctgagtctcggagcgaatcctaacatcctg
aacaaagcggctctctcaccactgcacctcgccgtcagcctcagacacaaccacatagtg
gagcaactcctgacacacagagagacgaatgtgaacctggaaggcgatctgggaaacaca
cctttaactctggctgcttcagtggacaaccatgaggcgcttctcatactgcacaggcac
ggcgccaaactgtgctgccagaacaagctgggtcacttggccatccacgccgccgccttc
gcaggagccaagaggtccatggaggtgattctccaaaaaggagaggagaaaggcgtgccc
attgagagacacataaactacgtggacaaatccatcagcagtcctcttcacctggccgta
cgtggaggaaacctcgaggtcatcaagctctgcatcgctcacggcgccaaaatcgaccaa
cagcagtgtgataaatccaccgctctccactttgcgtgcactcagggagccacggaagcc
gtgaaggtgatgctccaggcgtacgagagagtgtgtgacatcatcaacatcaccgacgga
gcgttccaaacaccgctacataaggcggccatttttgaccactatgaactggtggagtat
ctaatctcacagggcgccgacatcgacttccccgactgtaaaggccactctccactgctg
ctagcgaccagctgtggtgcctggagaaccgttaacctgctgctgtcacacggtgccgat
ctgacggctaaagacaaagctggatgcaacttcctgcatctcgccatcttgcagcctcga
ggtctgaagaaccttccggcagaagttctgcagcatgagcatgtgcgagagctgctgaac
gatgaagactcagagggctgcactcctcttcactacgcctgcaggctgggaatccctgac
tccgtgaagaacatgctcggcctggaggtctcactcgaccagaagtccaagcagaagaaa
tcggccttacactttgcagctgagtacgggaggatcaacacgtgtcaccggctcctggag
accatgacagacacacgtctgctgaacgagggtgatgagaacggcatgacaccgttacac
ctggcttcacgaggcggccatgttaaagtggtcgagctgctcctcagaaaaggtgctctg
ttccacagtgattataaaggctggtcctgtttacatcacgctgcggccgagggatacacg
cagaccatggacagcttactcacatctaacatcaaactcctggacaaaaccgacggagac
ggaaacacggcactgcacttggctgcacgagcgggacacgttgctgccgttcgcctcctg
ctgtccagaggagctcagatcctgctgaaccgcagcgacgcctccttcctgcacgaggcc
atacacaacgggaggaaagacgtcacgtgcgccgtgatcgacagcgacaggtgtgaggaa
gccatcactacgtttaaagtgaactcagccaaacgctgcactgtcctggacatgatcgag
tttctccctgagtgtttcaagcatcttctagacacctgcattaaagagtcagaggaagac
gtgaactcctgcagctactatctggaatataatttccagtggcttcaacagccaaaacag
tacgctaaggacagggagaagacggagaaagaagacgaatacaaacccctggctgcactc
aacgccatggtggagtttaatcgtgtcgagttactgacgcatccagtgtgcaagaaatat
ctggaaatgaaatggcatgcgtacggggtgaaagctcacttgctcaatatgaccatgtac
acgctgggcgttttcccgctgacctacctgatcgtcaatctgcggcccaatctgagcgtg
gagaaaaacgtgacgatcaagatggtcactaatactctggacaagcagtgttatttcatc
acaacctgcatgtttctggtcctcgcgatgaatttatacgcagtcggcaaagaagtagtg
cagatgtttcagcagaggttaaagtacctgcaggacgtgtcgaacgtgacggactgggcc
gcgaccatctgctctctgctcttcgtccttcctctcctgctgaacgtgaagaaatcgtgg
cactggcaggccggagctctggcgtctctcgcctcctgggtcaacctgctcctctacctg
cagcggtttcagaggtttgggatatacgtggtgatgtttcgggagatctgcaagacgctg
ctgagcatcattctgatattcgtctatctgatcctggcgttcgctctggccttctacgcg
ctgatgatcgaacagaaacattttggccgtctgtttctctcgatgatgcaaacgtttgcc
atgatggcaggagagatcaactaccaggacaacttcctgaaacccttcatggccagacat
cttcccttccccatactgacgtacttcatcttcgtttggttcgtcctgctcgtgccgatt
ctgctcatgaacctgctaattggtttggctgtgggagacatcgcagaggtgaagaacaac
gcctgtttaaaacagataggaatgcagattgaacttcacactaatctggaggagcgtctg
ccctcctggttcatgaaaagagtcgaccaaatctccgtgaaggaatttcctaacaagtgc
tacaaaggcaagaggtggttcttctgtggaggtgaagtgaacaaagtgagagcacggctg
agttccagcacacggcagtgcacacagctggagagagaactcaccaaacagaaacacaga
ctgaaggatctctctgagtctatggagaagcagcacaacctgctgaagctgatcgtgcag
aagatggagatcagctccgaggcggaggaaaacgacggccctcgagtcctgcgcgacttc
acgcacaaactcagcgccaagagcaagtgggggccgctgctgcgcgccgttacggccaag
aggaagtga
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