Pangasianodon hypophthalmus (striped catfish): 113543542
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Entry
113543542 CDS
T05759
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113543542 (chd1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113543542 (chd1)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113543542 (chd1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
113543542 (chd1)
SLIK complex
113543542 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Chromo
Helicase_C
CHD1-like_C
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113543542
NCBI-ProteinID:
XP_026797641
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MDGRSEDESVSNSSGDSSNSDDESGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSG
SQSDSDSEKSKGKNGQNISAKIDSAEFWKSNPSILAVQRSAMLRKQQQQQQQSSSNSDSD
EESSSSDDSDDDSSRKRKSKGTGSDSDSGSGSGSGSGSDSSNSSAEEEAENSEESVSDYE
PSHKVKSRKPPNKTIARNGKKSKVSKKKPSASSSDEEDDYKKALAGPRRQATVNVSYKED
EELKTDSDDLVEVCGEDVPPPEEDEFETLERVMCIRIGRKGATGATTTVYAVEADGDPNA
NFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNFKKKEQEKKKWLKT
ASPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWED
GALIARKFQKCIDAYMSRNQSKTIPFRDCKVLKVRPRFVPMKKQPHYIGGEGLELRDYQL
DGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFNEHQLYGPFLLVVPLSTLTSWQ
REIHLWAPQMNVVVYLGDISSRNMIRTHEWMHAQNKRLKLNILLTTYEILLKDKSFLGNV
SWAFIGVDEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFH
SWEQFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYY
KWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNDFHNKTEALQHLIRS
SGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQA
LDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQ
VNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFNKEEL
SAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFS
MMEEEDMDMDADGNQKTWDAIIPEEQRRRLEEEERQKELAEIYMLPRMRNCAKQISFNGN
EGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPL
ERLDAIARDAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRI
SGVQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIEWGKEDDSSLLIG
IYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQR
QTGTANSRKRKPRGKKNKTVKPKVDEVINSLSSAPPSEKSSEDEEDKEDEKESPPSKPPS
NRRGRASDRVVKEEEEEEEEEEEEEEEEPEPEPHVKEPEEKEIKEREVKKDIKKEKKEEG
RDNKEKKEPKEKSKTMEYRVEESFTEKTPEIKAEVREKSKKADTPVHITAGGENVPVSEE
SEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITDCLKEY
TNLEHIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQTADQNTSTVNTQTFRH
TDIERLKDSQQDESSRDSYSSERHHSTSRSHEQSKERHSSDSYRKSSDSRKRPYSSFSNG
KDHRERDHYRERQDSRYYSDSKHRKLDDHRSSRDNWSDSNNKERVHSEHRSSSDYSHHKA
SRDYRYHSDWQLEQRPSGSGPRSPRDQRSPYDSRSPLGHRSPFEYSSEHKTTPEQVWSGR
KT
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagcagcggagattccagtaactcg
gacgatgagtctgggtctgggtctggatctggttccggctctggttccagctccagcagc
agcagctccagtagcagccagtcagggagcagcgactcaggaagtggctcagactcggga
agccagtccgattctgattctgaaaagtccaaggggaagaatggtcagaatatctctgcc
aagattgattcagcagaattttggaaatctaatcccagtatcctggcagtgcagaggtca
gctatgctcaggaaacagcagcaacaacagcaacagagctcctcaaacagtgactcagat
gaggaatcctcaagtagtgatgactcagacgatgactcttccaggaagcgaaagagtaaa
gggactggttctgactccgattctgggtctggctctggatctggttcagggagtgactcg
tccaattcttcagctgaagaagaggcagagaacagtgaagagtcagtttcagactatgag
ccgagccacaaagttaaaagcagaaagccacctaacaagactattgccagaaatggaaaa
aagagcaaggtttcaaaaaagaagccctcagcctcttcgtcagacgaggaggacgattat
aaaaaggctctggcaggtcctcggaggcaggctacggtgaacgtcagctataaagaggat
gaagaactgaaaacggactctgatgacttggtggaggtgtgtggggaggacgtcccaccg
cctgaggaggatgagtttgagactctggaaagagtaatgtgcataagaataggacgaaaa
ggagccactggggccaccacgacagtctatgctgttgaggctgatggagaccctaatgcc
aacttcaacccaaacaagcagccaggagatgtgcagtacttgatcaaatggaaaggctgg
tcacacattcacaacacctgggagacggaggagacactgaagcagcagaacgtgaagggc
atgaagaaactggacaatttcaaaaagaaggagcaggaaaagaagaaatggctgaaaacc
gcttcacctgaggatgtggaatacttcaactgccagcaggaactcatggatgacctgcat
tcacagtatcagcttgtggagagaattattggccattcaaatcagaagtcagcagcaggc
tacccagactacttatgcaaatggcaagggcttccatattcagaatgcagctgggaagat
ggggcacttattgctagaaaattccagaagtgcatagatgcctacatgagccggaaccag
tccaaaacaatccccttcagggactgcaaggttttaaaggtgaggccgcggtttgtgcca
atgaagaaacagcctcattatatcggtggagaaggacttgagcttcgagactaccagctg
gacggcttaaactggatggcccattcgtggtgcaaagggaacagttgtattctagctgat
gagatgggccttggaaagaccattcagaccatctcctttctgaactatctgtttaatgag
caccagctctacggaccgtttctactggtggtgcccttgtctacacttacctcctggcag
agggaaatccatctctgggccccacagatgaacgtagttgtctacctgggtgacatcagc
agtaggaacatgatcagaacacatgagtggatgcatgcccagaacaagcggctaaagctc
aacatccttctaactacatatgaaatcctcctgaaagataagtcatttctggggaacgtg
agctgggcattcattggtgtggacgaggcccacaggttgaagaatgatgattcccttttg
tataagaccatgattgagttcaagtccaaccaccggctccttatcactggaacacctctg
cagaattccctcaaagagctatggtcactcctccatttcatcatgccagagaagtttcac
tcgtgggagcagtttgaggaagagcatggtaaaggcagggactcaggctacacaagcttg
cacaaggagctggagcctttcctgctacgcagggtcaagaaggatgtggagaagtcactg
cctgccaaggttgaacagatccttagggtggagatgagtgccatccagaaacaatactac
aagtggatcttgacgagaaactacaaggcactcagcaaaggcacaaaaggaagcacgtct
ggttttctcaacatcatgatggagctgaagaagtgctgtaaccactgctacctcatcaaa
ccaccagaggataatgacttccacaacaaaacagaggccttgcagcacttaatccgcagt
agcgggaagctggtacttctggacaagctcctggtgcggctgaaggagcgtggccaccgt
gtgctcatcttctcccagatggtccggatgctggacatccttgcagactacctgaggagc
cgccagttcttattccagaggttggatggttccatcaagggcgagatgaggaagcaggca
ttggatcattttaatgcagaaggttctgaggacttctgttttctgttgtccacacgagcg
ggtggcctgggcattaacttggcttctgcagataccgtggtcatctttgactcagactgg
aacccccagaatgacctgcaggctcaggccagagctcacaggattgggcagaagagacag
gtaaatatttatcgtttggtgactaaggggtctgtggaagaagacatcattgagcgagcc
aagaagaagatggtgctggaccaccttgttattcagaggatggacactacagggaaaaca
gtccttcatactggtgctgctccttccagcagttccacccctttcaacaaagaggaactg
tctgctattttaaagtttggtgctgaagaactttttaaggagccagagggagaagaacaa
gagccccaggagatggatattgatgagattctgaagagagcagagaccagggaaaatgat
cctggtccatctactgtaggagaagagcttctctcacagtttaaggtggcaaacttctcc
atgatggaggaggaagacatggacatggatgcagatggcaaccagaagacctgggatgca
atcatccctgaagagcagcggaggagactggaggaagaggagaggcagaaggagctagca
gagatttacatgctgccccgcatgaggaactgtgccaaacagataagctttaatggtaat
gagggcaggcggagccggaatagaagatattctggctctgacagtgactctgcctcagac
cgaaagaggccgaagaagcgaggcagaccacgaactattcctcgcgagaacatcaagggc
ttcagtgacgctgaaatacgaaggtttatcaagagttacaagaaatttggtggccctttg
gaaaggctggatgctattgcccgggatgctgagctggtggataagtcagagcatgacctg
aggcggctcgcagagacggtacacaatggctgtctgaaaacactgagggaaaatccatgt
ggaccagaaaaaacctcaggaggcaggcgagggaaggtgaagggacctaccttcaggatc
tcaggtgttcaagtcaatgctaagctagtaatctcacatgaggaggaactggcccctttg
cacaaagccattcctgctgacccagaggagaggaagaggtatatgcttccttgccatgca
aaggcagctcattttgacattgagtggggcaaagaagatgactccagccttcttattggg
atttatgagtatggctatggaagctgggaaatgattaagatggacccagaccttaacctc
acccacaagcttttaccagacgaccctgataagaagccacaggccaaacagctccagaca
cgagctgactacctcatcaaattactcagcaaggacctcgccaaaaaggaggcccagagg
caaacgggcacggctaattcccgaaagaggaagccacggggaaagaagaacaaaactgtg
aaaccgaaagtggacgaagtcatcaacagtctgtcctctgctcctccctcagagaagagc
tcagaagatgaggaggacaaggaagatgaaaaggaatccccacccagcaagccaccatcc
aacagaagagggcgagcttctgatcgggtggtaaaggaggaggaggaggaggaggaagaa
gaagaggaggaggaggaggaggaaccagagccagaaccccacgttaaagagccagaggag
aaggagataaaagagagggaggtaaagaaagatatcaaaaaggagaagaaagaggaaggt
cgggacaacaaagagaaaaaggaacccaaagagaagagcaagactatggagtacagagta
gaggagtctttcacagagaagactccagagataaaagctgaagttcgggaaaagagcaaa
aaggcagacacacctgtccatatcactgctggaggagagaatgttccggtctctgaggag
tctgaggagctcgaccagaagaccttcagcgtgtgtaaggagcgcatgcggccagtgaag
gcagccttaaaacagctggatcgtcccgagaaaggtctttctgaacgtgagcagctagag
catactcggcagtgcctaatcaaaattggagaccacatcacagactgtctaaaagagtac
accaaccttgaacacatcaagcagtggagaagaaatctttggatatttgtttccaaattc
acggagtttgatgcaagaaaactgcataaactgtataagcatgcaatcaagaaaagacag
gaaaacgctcagacggcggaccaaaacactagcactgtaaatacacaaacctttagacac
acagacattgaaaggttaaaggactctcagcaggacgagagcagtagagacagctacagt
tcagagcgacaccactcgacctcacgcagccatgagcagagcaaagagcgccactccagt
gactcatacaggaaaagctcagactccaggaagagaccgtactcctccttcagcaatggc
aaagatcaccgagagcgagaccactacagagagcgccaggacagcagatattacagtgac
agcaagcataggaagctagatgatcaccgttctagtcgagacaactggtcagacagcaac
aataaggagcgtgtacactcggagcaccgctccagctcagactacagccaccacaaggct
tctcgtgactaccgctatcactcagactggcaattggagcagcgcccatcgggtagtggg
ccacgttctcctcgagaccagagatcgccctacgactcccgatcgcccctgggccaccgg
tcaccctttgagtactcttctgagcacaagaccacgcccgagcaggtctggagtggtcgt
aagacatag
DBGET
integrated database retrieval system
