Pangasianodon hypophthalmus (striped catfish): 113543696
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Entry
113543696 CDS
T05759
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
phyp03015
mRNA surveillance pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113543696
09122 Translation
03013 Nucleocytoplasmic transport
113543696
03015 mRNA surveillance pathway
113543696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113543696
03041 Spliceosome [BR:
phyp03041
]
113543696
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113543696
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113543696
Spliceosome [BR:
phyp03041
]
Complex C
Other components
EJC/TREX
113543696
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113543696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
113543696
NCBI-ProteinID:
XP_026797895
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MPTVKTREQVKRNSRNKLLHRLNSKMTENDVDNELLDYEEDEVDATGGVGDGGLAGDGST
VALRKEGLKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC
QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAV
FFGGLPIKKDEETLKRESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDM
RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV
KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERL
ARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA
ITFVSDESDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgccgacagtaaagacgcgcgagcaggtgaagcgaaattcacgaaataaattgttgcac
agattaaattcaaaaatgactgagaatgatgtggacaacgagctgttagactacgaggag
gatgaggtggatgcgacaggaggtgtcggggacggagggctcgctggagacggcagcacc
gtggccttgaggaaagagggactcaaaggatcctacgtttccatccactcctcagggttc
agggacttcctgttaaagcctgagctcctcagggccattgtggactgcggcttcgagcat
ccgtctgaggttcagcatgagtgcattccacaagctatcttgggcatggatgtgttgtgc
caggccaagtcgggtatggggaagacggcggtctttgtcttggcaacactccagcagctg
gagccagtgactggacaggtatcagtgctggtgatgtgtcatacccgagagctggcattc
cagatcagcaaagagtatgaacgcttctccaagtacatgcctgctgtcaaggtggcggtg
ttctttggcggtttgcctataaagaaggatgaggagacgctgaagagagagagtcctcac
atagtggtgggaacacccggccgcatcctggccctttcacgcaacaaaagtctcaacctg
cgccacatcaaacacttcatcctggacgagtgtgacaaaatgctggaacagcttgacatg
cgacgtgacgttcaggagattttccgcatgaccccgcacgagaagcaggtcatgatgttc
agcgccactttgagcaaagaaatccggcccgtctgccgaaagttcatgcaagatcccatg
gagatatttgtggatgacgagaccaagctgaccctgcacggcctgcagcagtactacgtc
aagctgaaagacaacgagaagaacaggaaactgtttgatctgctggacgtgctggagttc
aaccaggtggtgatctttgtgaagtcagtgcagcgctgcatcgctctcgctcagctgctg
gtggagcagaacttccccgccatcgccatccacagagcaatgcctcaggaggagaggctc
gctcgatatcagcagtttaaagactttcagaggcgcatcctcgtggccactaacctgttt
ggcagaggaatggacatcgaaagagtcaacatcgcttttaactacgacatgcccgaggat
tcagacacgtacctgcacagggtggccagggcgggcaggtttggcacaaaaggtctagcc
atcacgtttgtgtcagatgaaagcgatgcccgaacgctgaatgacgttcaggacaggttt
gaggtgaacatcagtgagcttccagaggagatcgacatctcgtcttacattgagcagacg
cgataa
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