Pangasianodon hypophthalmus (striped catfish): 113543718
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Entry
113543718 CDS
T05759
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
phyp03083
Polycomb repressive complex
phyp04110
Cell cycle
phyp04330
Notch signaling pathway
phyp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113543718 (hdac1)
03083 Polycomb repressive complex
113543718 (hdac1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113543718 (hdac1)
04350 TGF-beta signaling pathway
113543718 (hdac1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
113543718 (hdac1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113543718 (hdac1)
Enzymes [BR:
phyp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113543718 (hdac1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113543718 (hdac1)
HDAC complexes
Sin3A-HDAC complex
113543718 (hdac1)
BRAF-HDAC complex
113543718 (hdac1)
REST complex
113543718 (hdac1)
SHIP complex
113543718 (hdac1)
MiDAC complex
113543718 (hdac1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113543718 (hdac1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
113543718 (hdac1)
Chromatin remodeling factors
NuRD complex
113543718 (hdac1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113543718
NCBI-ProteinID:
XP_026797918
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRIPIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKTKRVKTEEEKDGEEKKDVKEEEKTPEEKMDTKGPKEELKTT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacttcccaaggaacaaagaagaaagtttgctattattatgacggtgatgtt
gggaattattactatggccagggtcatcccatgaagcctcaccgcatccgcatgacccac
aacctcctcctcaactatggcctctataggaagatggagatctatagaccacacaaagcc
aacgctgaagagatgaccaaatatcacagtgacgactacatcaagttcctgcgctccatc
cgcccagacaacatgtccgagtacagcaagcagatgcagagatttaatgtgggtgaagat
tgccccgtgttcgacggcctgtttgagttctgtcagctttcaacgggcggctctgtcgcg
ggtgccgtgaaactaaacaagcagcagacagacatcgccattaactgggcaggcggcctt
catcatgccaagaagtcggaggcgtctggtttctgctacgtcaacgacattgtgctggcc
atcctggaactgctcaagtaccatcaaagagttctgtatattgatatcgacatccaccac
ggtgatggagtagaggaggccttctacaccacagatcgtgtcatgaccgtgtctttccat
aagtatggagagtactttcctggcacaggtgacctcagagacattggtgctggaaagggc
aaatactacgctgtgaactacccactcagggatgggattgatgacgagtcttatgaagcc
atattcaaacccatcatggccaaagtgatggagatgtaccagccgagtgctgtagtgctt
cagtgtggtgctgactctctgtcgggggacaggctgggctgcttcaacctcaccatcaaa
ggtcacgctaaatgtgtcgagtacatgaagagttttaacctgcccttgctcatgctgggt
ggaggtggctacaccatcaggaacgtggcccgctgctggacctatgagacagccgtcgcc
ctggacagcactattcctaatgagcttccatacaatgactactttgagtatttcggacct
gacttcaagctccacatcagtccctccaacatgaccaaccagaacacaaacgactaccta
gaaaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccacgctcccggagtg
cagatgcaggcgatcccagaggacgccgtgcaggaggacagcggggacgaggaggatgac
ccagacaaacgtatccccatccgtgcccacgacaagcggatagcctgcgatgaagagttc
tccgattctgaggatgaaggacaaggcggccgcagaaatgcagccaactacaagaagacc
aagcgagtgaagactgaggaggagaaagacggagaagagaagaaagatgtgaaagaggag
gagaaaaccccagaagagaaaatggacacaaaagggccaaaagaagagctgaaaacaacc
tga
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