Pangasianodon hypophthalmus (striped catfish): 113543991
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Entry
113543991 CDS
T05759
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113543991 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113543991 (mtrex)
03041 Spliceosome [BR:
phyp03041
]
113543991 (mtrex)
03009 Ribosome biogenesis [BR:
phyp03009
]
113543991 (mtrex)
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113543991 (mtrex)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113543991 (mtrex)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113543991 (mtrex)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113543991 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
113543991 (mtrex)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113543991 (mtrex)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113543991 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113543991
NCBI-ProteinID:
XP_026798353
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MADVFGDDLFSVFDEEQATSSKKTSSKTESRVGKTAGTHGREKTESPSGAKTEREAENDG
TDEVSYGKKPKLDTVLSEEINLADLMPKVKVEQVETVEGCTHEVALPADQQYTPLKPRVG
KAAKEYPFLLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGASGGGGKWDPKGR
RGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVF
SNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKEAIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVIEK
MQKLEEMYNSIEIPNEDSVVTYYKIRQQLAKLAKEIEEYVHKPKYCLPFLQPGRLVKVKK
DNLDFGWGIIVNFSKKSNVKASTGDMDPLYVVEVLLNCSKESVKNAATEAAKPAAQGEKG
EMQVVPVMLNLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPIDDMG
ITDSGLKKVIQKVEAFEHRMYTHPLHTDPSLGTVYTLCEKKAVIAGDIKAAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQ
ATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDAYLNQFRP
HLMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
LGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcttcggagacgatttatttagcgtttttgacgaggaacaggcgacttct
agtaaaaagacaagctcaaagaccgagtctcgtgtcgggaaaacagctggcacacatggc
agagaaaagacagaatctccgtctggggcaaagacggaacgagaggcagagaacgatggc
actgacgaggtttcgtacggaaaaaagcccaaactggatacggtgttatcagaggagatc
aatcttgcagacttgatgcctaaagtcaaagtggagcaggttgagacggtggagggctgc
acacatgaggtggcgttgcctgcagatcagcaatacactccactgaagccacgagtagga
aaagcagccaaggagtacccgttccttctcgacccatttcagcgcgaggccattctgtgc
atcgacaacaaccaatccgtcctcgtctccgctcacacctcagccgggaaaaccgtgtgt
gccgaatatgctattgctctggctctgagggagaagcagcgagtgatcttcaccagcccc
attaaagccctgagtaatcagaaatacagagagatgtacgaggagttccaggatgtggga
ctgatgactggagacgtgacgattaaccccactgcctcctgcctcgtcatgaccactgag
attttgaggagcatgctgtaccgggggtcagaggtcatgcgtgaggtggcctgggtcata
tttgacgagatccattacatgagggactcggagcgtggtgtggtatgggaggagaccatc
atccttcttcccgataacgtacattacgtcttcctgtcggccaccatccccaacgcacgg
cagttcgctgagtggatctgtcacctgcacacacagccttgccacgtggtgtacacagac
taccgacccactccgctgcagcactacatctttccagcaggaggtgacggacttcacttg
gtcgtggatgagaatggtgagttcagggaggataacttcaacacagccatgcaggttctc
cgggacgctggagactccggagcgagtggaggaggaggaaaatgggaccctaaaggaaga
agaggcgggaccaagggtccatccaatgtgtttaagatagtgaagatgatcatggagagg
aacttccagcccgtcatcatcttcagcttcagtaagaaggagtgtgaggcgtacgctctg
caggtgtccaaactcgacttcaatacagatgaagagaagaaactggtggaggaggtattc
agcaacgccatcgactgtctatcagatgaggataaaaagctgccccaggtggagcatgtt
ctccctctgttgaagagaggaatcgggatccatcatggcggactgttgcccatcctgaaa
gaggccatcgagattctcttctctgagggactactgaaggccttgtttgcaacagagaca
tttgccatgggaatcaacatgcctgctcgcaccgtgctcttcaccagcgctcgcaagttc
gacggcaaagacttccgctggatcagctcaggagagtacatccagatgtcaggccgagcc
gggaggagagggatggacgagagaggaatcgtcatctttatggtggatgagaagatgagt
ccagctgtggggaagcagctcttaaagggttctgctgaccctctgaacagtgccttccac
ctcacatataacatggtcctgaacttgctgcgtgtggaggagattaaccctgagtacatg
ctggagaagtccttctaccagttccagcactacagagctgtccctggtgtaatcgagaag
atgcagaagctggaggagatgtacaacagcatcgagatccccaatgaggacagcgtggtc
acttactataaaatccgccagcagttagccaagctggccaaagagatcgaagaatacgta
cataaacccaaatactgcctgcctttcctacagcctggccgcctagtcaaggtgaaaaag
gacaatttggattttggctggggcatcattgttaacttctccaagaagtcaaacgtcaag
gccagtactggtgatatggatcctctgtatgttgtggaagttttattaaactgcagtaag
gaaagtgtgaaaaacgctgcaacggaggcagccaaaccagcagcacagggagagaaagga
gagatgcaggtggtgcccgtcatgctgaatctcctcacctccatcagttcagtgcggctc
tacatccccaaagacctgcggccctacgacaaccgacagagcatgcttaaatccatacag
gaggtgcagaaacgtttccctgatggtctccctctgttagaccccatcgatgatatgggc
attacagactcagggctgaagaaggtcatccagaaggtggaggcctttgagcacaggatg
tacacacacccactccacactgaccccagcctcgggactgtctacacactctgtgagaag
aaagcagtgattgcgggtgatatcaaggcagcaaagcgggagttgaagaaagcccgcacc
gtgctgcagatggacgagctgaagtgtcggaagcgcgtgctgcgacgcctcgggtttgcc
acctcctccgatgtcatcgagatgaaggggcgggtcgcctgtgagatcagcagtgcggac
gagctgctcctgaccgagatgatgtttaacggtctctttaacgatctgactgctgaacag
gcgacagccttactgagctgctttgtcttccaggaaaatgctaatgagatgcctaaactt
acagagcagttagcaggtccactccgacagatgcaggaatgtgccaagcgcatcgctaaa
gtctcagccgaggcgaagctggacgtagatgaggacgcctacttgaaccagttccgtcct
cacctcatggacgtagtgtacacttgggccaacggagcctccttctctcagatctgcaaa
atgacggatgttttcgaaggcagcattattcgctgcatgaggcgcctggaggagcttctg
aggcagatgtgccaagcggccaaggccatcgggaacacagagctggagaacaagttcgct
ctcggcatcacgaagatcaagcgtgacattgtgtttgctgccagtctttacctgtga
DBGET
integrated database retrieval system
