Pangasianodon hypophthalmus (striped catfish): 113544268
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Entry
113544268 CDS
T05759
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113544268 (ddx21)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113544268 (ddx21)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113544268 (ddx21)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113544268 (ddx21)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113544268 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
AAA_30
Cas3-like_C_2
Gly_acyl_tr_C
Motif
Other DBs
NCBI-GeneID:
113544268
NCBI-ProteinID:
XP_026798761
LinkDB
All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MNDVDEGLDSNLETKQKKKKKKAATSDDTTIDQAPSVNGVSTNSPKTQVKVNGHVTDSTQ
SSEDSNSESEKDVETPEQREGAFSNFRISQDTIKLLQARGVTYLFDIQVKTFNSVYDGKD
VIGQARTGTGKTFSFAVPLVEKLQSGAEDKRRGRAPKVLVLAPTRELAIQVAKDFKDITR
KLSVHCFYGGSSYNPQVDAIRSGIDVLVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQML
DMGFAEQVEEILSASYKKGDESNPQTLLFSATCPPWVYDVAKKYMRSQYVHVDLIGKKSQ
KAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFCETKKEAHELSMNTSIKQSAQ
SLHGDIPQKQRELTLKGFRNGNFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRS
GRTGRAGRTGICICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIVKSSSKDAVRFLDS
VPPAAVEHFRAAAERLIEERGAVEALAAALAHISGATSLEQRSLLNSDAGYTTLVLNCSQ
EMHNIGYAWRGLKEQLGEEIDDQIKRMTFLKSKKGVCFDVPADKVKEIQDKWQDGRRWQL
TIATELPELEESMRNRGERGSGARARGHGGFRSGFRNGFRGGNNRGAGRGGGGRGGRRDG
GRGGAQKRSFSQAFDY
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgtggacgagggattagacagcaatttggagaccaaacagaagaagaagaaa
aagaaggcagctacatcagatgacacaacaatcgaccaagcaccatctgtcaatggcgtt
agtacaaactcaccaaagactcaagtgaaagtcaatgggcatgtcacagactcgacgcag
tccagtgaagactccaacagtgagagtgaaaaggatgtggagacaccagagcaaagagag
ggcgccttctctaatttcagaatctcacaggacaccatcaagctactccaagcacggggt
gtgacgtatctgtttgatattcaagtgaagaccttcaactctgtgtatgatgggaaggac
gtgatcggccaagcccgaaccggcactggaaagactttctcttttgcagtcccactagta
gagaaactacaatcaggagctgaggacaaaagaagagggagagctccgaaagtgctggtt
ctcgctcctactcgagagctggcaattcaggtggctaaagacttcaaggatatcaccagg
aagctctctgttcactgcttctatggaggaagctcctacaaccctcaagtggatgccatt
cgcagcggcatcgatgttcttgttggcaccccaggccgaataaaagaccaccttcagaac
aacaaactggatctgtcccagctgaaacatgtggtgctggatgaagtggaccaaatgctt
gatatgggctttgctgaacaagtggaggagatcctctctgcttcctacaaaaaaggtgat
gaaagcaaccctcagactctcctcttttctgccacttgtcctccttgggtttatgacgtg
gctaagaagtacatgcgctcccagtatgttcacgtggacctcataggcaaaaaatctcag
aaagcagccactacagttgagcatctggccatagcatgccactggtctcagagggcagca
gtgattggtgatgtagtgcaggtgtatagcggcagccacggacgcaccatcgtcttctgt
gagaccaagaaggaagcacatgagctgtccatgaacacatccatcaaacagagtgcacag
tctttgcatggagacattcctcagaaacaacgagagctcaccctgaagggcttcaggaac
ggcaatttcgaggtcctggtggctaccaacgtggctgcacgaggcctcgatatcccagaa
gttgatttggttgtacagtgttctcctccaaaggacgttgagtcatatattcaccgttct
gggcgaactggcagagcgggaagaactggcatctgcatctgtttctatcagcgcaaagaa
gaagaccaactgcgatatgtggagcagaaggctggcattactttcaagcgtgttggcgtc
ccaactgctaatgacatcgtcaaatcctccagtaaagatgcagtcaggttcctggattct
gtacctccagcagctgtagaacatttccgtgcagcggccgagaggctaatcgaagagcga
ggtgcagtggaggcgctagccgctgctcttgcacacatatcaggagccacgagtctggag
cagagatcgctcctcaactcagatgctggttataccacgttagtgctcaactgctctcaa
gagatgcataacatcggctacgcctggcgagggctgaaagagcagctcggggaggagata
gacgaccagatcaaacgaatgaccttccttaagagtaaaaagggagtttgctttgacgtc
ccagccgataaagtgaaagaaatccaggacaaatggcaggatggccgcaggtggcagctg
accatcgccactgaacttcctgaattggaggaaagcatgcggaaccgtggagaaagaggg
tctggtgcaagggccagaggtcatggtggattccgcagtggcttccgcaatggcttccgt
ggtggcaacaaccgaggtgcaggaagaggaggtggaggaagaggtggaagaagagatgga
ggaagaggtggtgctcaaaagaggagcttcagccaggcctttgactattaa
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