Pangasianodon hypophthalmus (striped catfish): 113544373
Help
Entry
113544373 CDS
T05759
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
phyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113544373 (rfc1)
03410 Base excision repair
113544373 (rfc1)
03420 Nucleotide excision repair
113544373 (rfc1)
03430 Mismatch repair
113544373 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113544373 (rfc1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113544373 (rfc1)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113544373 (rfc1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113544373 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_33
AAA_5
AAA_7
Rad17
AAA_30
AAA_16
RuvB_N
BRCT_2
AAA_14
AAA_17
RNA_helicase
AAA_18
nSTAND3
AAA_19
NTPase_1
RPC5_C
AAA_28
SKI
Motif
Other DBs
NCBI-GeneID:
113544373
NCBI-ProteinID:
XP_026798979
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MDIRRFFAPKPGHGGGSSSTDDEPKNKKKPASKTTSSKLEEKRSVKRKKRVIADSDEEEE
ERKGKKSPKQKPAASGKKDPVTYVSDSDSDDAFMSLKKSSKLKENGCSKGKKDSDSKETK
SKQVKTPPVKSPSAKGEAKKNVLSPTPPKSTAPKHTPTSAFDYFGNSTAKRSDKKLVAST
STKRKVPTQDTEETPDDAAIAKQLQMDEDMELEKQIHEDEEFARTLAMFDEAPVPKKARV
DSRSPSKISSRANGAETKPVPKEPSPKKSPVKASSKLALMKKRADEEQEQRKSEKEEKKS
KLVISPKKEPIAQASSETAATPKSGVSPGSAKRISTPKSGGSNKTSPTKPEISPEDSEKK
RMNSAAFRNYLNREGPRALGSKEIPQGEENCLEGCVFVLTGVLESMEREDAKSLIERYGG
KVTGNVSRKTTYLVLGRDSGASKTEKAQGFGTKIINEDELLELIRTKPGKKSKYEIAAEA
ESKATKSRTPDSKVKRTPPGRKVSPQKPSASKSSPSPRKSRPSSSSTPGTSRASRQGSSS
EVRKTLEFGAGKSTPSVAEDDGTSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLKSWH
KNHSGNAKPTAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNAS
CTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSDKHVLIMDEVDGMAGNEDRGGIQEMIG
LIKNSKIPIICMCNDRNHMKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPA
LNEVILASNQDIRQVLHNLSMWSATDKVMTYDQAKADANKAKKDMKMGPFDVCRKVFLSG
EETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVRPAAAGGNLKNHLVLLSKTADSICDGD
LVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHSRIVQEL
SSHMSLKTLSSKQAVNLDYLPYLRPALLEPLQCRGADGASESVKLMDDYDLIKEDFDSIM
EISTWGGQPDPYSKLDPKVKAAFTRAYNKESHLTPYSLQAVKKGRRGAVDADLALDPDND
LQGQEEEEEETLNTDAMIKQKKAKPTKEVKQEKAGDSGKGKGKGKGKK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcagattcttcgcgccaaagcctggccacggtggtggcagcagcagcact
gacgatgagccgaagaataaaaagaaacccgcttccaagactacaagctccaaattggag
gaaaaacgatcagtcaaacggaagaagagggtcattgctgattcagatgaggaagaagag
gagaggaaaggaaagaaaagccctaaacagaagcctgcagcatctgggaagaaagatcct
gtgacttatgtgtctgattcagactccgatgacgcctttatgtctctgaaaaagtcctcg
aaactcaaagagaacggctgcagcaaagggaagaaggactcggactcgaaggagacaaaa
tcgaagcaggtgaaaacgcctcctgttaaatccccgagcgcgaaaggagaagcgaagaag
aacgtactcagtccgactcctccgaagtcgaccgcgcccaaacacacccccacctctgcg
tttgattacttcggcaactccacggccaagagatccgataagaagctggtggccagtacg
agcaccaagaggaaagtgccaacacaagacaccgaggaaacacccgatgatgcggccatc
gctaaacagttacagatggatgaggacatggagttggagaagcagatccatgaagatgag
gagtttgctcgaaccctggccatgtttgacgaggccccagtgcctaaaaaggctcgtgtg
gactcgcgttcgccctcaaagatcagctctcgagcaaacggtgcagaaaccaagcccgtg
ccgaaggagccttcgccgaagaagagtcccgtcaaagccagttccaaactggctctgatg
aagaagagagccgacgaagagcaggaacagcggaagagcgagaaggaggagaagaaaagc
aaactcgttatctccccgaagaaagagccaatagcacaggcttcatccgagacagcggcc
actcccaaatcaggtgtttctccaggaagcgcaaaacgcatttccacacccaagagtgga
ggaagcaacaagacctctcctactaaaccagagatcagtccggaggactcggagaagaag
cgtatgaattctgcagcgtttcggaactacctgaaccgagaaggacctcgcgctctgggc
tctaaagagatcccgcagggagaggagaactgccttgagggctgtgtgtttgtgttaacg
ggtgttttggagtccatggagagggaagatgcgaagtctctaatagaacgctacggtggg
aaagtcacgggaaacgtcagccggaaaaccacgtacctggtgctgggccgagacagtgga
gcctccaagactgagaaggcacagggttttggcaccaagatcataaatgaggatgagtta
ctggaattgatccgaaccaaaccaggcaaaaagtccaaatacgagatcgctgcagaagct
gagagtaaagccactaaatcaaggaccccagactctaaagtcaaacgcacccctccagga
cgcaaagtctcaccccaaaaaccctctgcaagcaagagcagtccctcgccgaggaaatcg
cggccatcttcctcttctacccctgggacttctagagcttcccgccaaggctcctcatcc
gaggtcagaaagactctggaattcggtgcaggaaaaagcacgccctctgtggcagaggac
gatggcaccagcctgttgtgggtggataagtaccgcccccgcagcctgaagaatctgatt
gggcagcagggtgagcaaagctgtgccaataagctactgagatggctgaagagctggcat
aaaaatcacagcggcaatgccaaaccaacagctgctaggtttggcaagtttggaggtaag
gatgatggttctgggtttaaagctgctttgctctctggacctcctggtgtggggaagacc
accactgctgctctcgtgtgtgaggagttgggttacagttacgtggagatgaacgccagc
tgcacccgcagcaagaacagtctgaaagaagtaatcgccgagtctctcaataacacaagc
attaagaacttctacacaggtgcatctcagacggtcagcgataaacacgtcctcattatg
gacgaggtggatggcatggcaggaaatgaggacagaggaggaatacaggagatgattggc
ctgataaaaaattcaaagatccccatcatttgcatgtgtaacgaccgcaaccatatgaag
atccgctcacttgctaactactgcttcgacctgcgtttccagcggcctcgtgtggaacag
ataaagggtgccatgatgtccattgcttttaaagaaggtttaaaaatcccgcctccggcc
ctcaacgaagtcattctggcgtcaaatcaggacattcgacaggtgctgcataatttgagt
atgtggtcagccacagacaaggtcatgacctacgaccaggcaaaagcagacgctaacaag
gccaagaaggacatgaaaatgggaccatttgacgtgtgcaggaaagtgtttctttcaggc
gaagagaccgcccacatgacactgattgacaagtccgatcttttctttcacgattactca
ctggcaccgctgttcgtccaagagaactacgtacatgtgcggccagctgccgcaggggga
aatctgaagaaccatttagtgctgctgagtaaaacggcagacagtatctgtgatggagat
ttagtggatagacagatccgctctcgccagacctggtctctgctacccacgcaggcaatc
tatgccagtgtgctgcctggggaattgatgcgtggttatatgagtcagtttcccacgttt
cccagctggctggggaagttctcatccacgggcaaacacagtcgcattgtacaggagctg
tcctcacacatgagtctgaagacgctgagcagtaagcaggcagtaaatctagactacctg
ccctacctgcgtcctgccctgctggagcctctgcagtgtcgtggggcagatggagccagt
gagagcgtgaagctcatggatgactacgacctcatcaaagaggattttgacagcatcatg
gagatcagtacatggggtggacaacctgatccgtactccaagcttgaccccaaggtgaaa
gctgcattcacacgggcttataacaaggagtcgcacttgacgccgtactcactgcaggca
gtaaagaaaggtcgcagaggagcagtcgacgctgatctggctttagaccccgacaatgac
ctccagggacaggaagaggaggaggaggaaactcttaatacggatgccatgatcaagcaa
aagaaggctaaacctacaaaagaggtcaagcaggagaaagcaggggattctggaaagggc
aaaggcaaaggaaaaggcaagaagtga
DBGET
integrated database retrieval system
