Pangasianodon hypophthalmus (striped catfish): 113544470
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Entry
113544470 CDS
T05759
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1-like isoform X1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113544470
04990 Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
113544470
Cell adhesion molecules [BR:
phyp04515
]
Immunoglobulin superfamily
SALM family
113544470
Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
113544470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
Ig_3
I-set
fn3
Ig_2
ig
LRR_9
Ig_DSCAM-DSCAML_C
PRIMA1
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
113544470
NCBI-ProteinID:
XP_026799092
LinkDB
All DBs
Position
Unknown
AA seq
744 aa
AA seq
DB search
MERFILCMMLFGVLVRGQQCPGRCICQTISPTLTLLCAKTGLLFVPHTIDRKTVELRLTD
NFITAVRRKDFLNMTSLVHLTLSRNTISQIAPHAFVGLKALRALHMDGNRLTDIKNDQLK
GLVNLRHLIMGNNQIHHIDPSSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDHIEAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDPKGSSGSSRLTVSFG
GNPLHCNCELLWLRRLTRKDDLETCASPDHLMDKYFWSIQEEEFICEPPLIIKHHVTKPY
VMEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNC
VASNAAGIATAAVEINMIPLPLFVNNTSHMKEADPGLSDITTSTKSGNNDTKQQDKRVVV
DELTSNSAMIHWPSERHIPGIRMYQIQYNSTMDDTLVYRMIPSESKTFRINDLAAGREYE
LCVLAVYDDGITSLTATRVVGCVHFRTAPETGQCQFAQAQFLGGTMIIIIGGVIVASVLV
FIVILMIRYKAYGTADASKVKGGTSVSIHQSGRATSKKQEHVGESPVGTDSHAIALLSLE
NETQQEEKALTPPVNSEVAALALVPAPPIPPSRRASLGAPPSDDAQTDSSLTGSTMSLCP
MGTSTSDRDRKRTAAAIGLLPGELARARHRFSFDGDYTLFQSHSYPRRARARRHKSSSQL
DVSPPTERRITFSSSTEWMLESTV
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagcggttcattttgtgcatgatgctgtttggggttctggtgagaggacagcagtgc
ccaggccgatgtatctgccagaccatctctcccaccctgaccttgctttgtgccaagact
ggactcctatttgtgccgcacactattgaccgcaagaccgtagagttgaggctcacagac
aacttcatcacggctgtccgtaggaaggactttttaaacatgacaagcctggtgcacctg
acactatcccgcaataccataagccagattgcacctcatgcctttgttggactcaaagca
ttaagggcgcttcatatggatggcaaccgactgactgatataaagaatgaccagctgaaa
ggtttggtcaaccttcggcatctcatcatggggaacaaccagatccaccatattgaccct
tcctcctttgacgagtttgtatccactattgaggatttggatttgtcttacaacaacctg
aggacgttgccgtgggaggctatagccaggatgaccaacatcaacacgctaacattggat
cataatcttatcgatcacatagaagctgggactttcacgctactcaccaaactggtccgc
ttggacatgacgtccaaccgtttgcagaagctgcctccagactccctcttccagcatgct
caagtgctgtctgatcctaagggttcctctggttcctctaggctgacagtgagttttggt
gggaacccactgcactgtaactgtgagttgttgtggttgcgcaggctcacccgaaaggat
gacctggagacttgcgcctcacctgatcatcttatggacaagtacttctggtctattcag
gaggaggagtttatctgtgaaccccctctcattatcaagcaccacgttactaagccgtac
gtgatggaaggccaaggcgtcacgctcaagtgtaaggccatgggtgatccagatcctgcc
attcactggcgctttcctgatggaaaactggtccacaataactcacgtaccatcctgtac
gataacggcactctggacatactgattacaaccctgaaagacagcggggcgttcaactgt
gtcgcctcgaatgctgcaggaatagccacggcagccgtagagataaacatgatcccactg
ccgttgtttgtcaacaacaccagtcacatgaaggaggctgaccctggcctgtctgacatc
accacctccactaaatctggcaacaatgacaccaagcaacaggacaagagggtggtggtg
gatgagctgacttccaattcagccatgatccactggccttcagagagacatattcctgga
ataaggatgtaccagatccagtataacagtactatggatgacactctcgtctataggatg
attccctctgagagcaagacgttccggatcaacgacctggcggcgggacgtgagtacgag
ttgtgtgtccttgccgtgtacgatgatggcatcacgtccctcactgccacacgtgtggtg
ggctgtgtccacttccgcaccgcacctgagaccggccagtgccagtttgctcaagcacag
ttcctgggtggcaccatgatcatcatcatcggtggcgtcattgtggcctctgtgctcgtc
ttcatcgtcatcctgatgatccgatacaaggcatatggcacggccgatgcctccaaggtc
aaaggtggaacgtctgtaagcatccaccagtcgggccgtgctacatcaaagaaacaggag
catgtaggcgagtctccggttggtacagatagccatgctattgcgctacttagccttgag
aatgagactcagcaggaagagaaggcattgacacctccggttaactcagaggtggcggct
ttggctctcgtacctgctccacccattccgccatcccgcagggcaagtttaggagcccca
ccttcagatgatgcccagacggacagcagcctgacaggctccaccatgtcgctttgcccc
atgggcaccagcacaagcgacagggacaggaagcggacggcagcggccattgggttgctg
ccaggtgagctggcaagggcgaggcaccgcttctcctttgatggggactacacgctcttc
cagagccacagttacccgagacgggcccgtgcccgccgccacaaatccagctcacagctt
gatgtctcgcctccgactgaacgccgcatcacgttcagcagcagcactgaatggatgctc
gagagcacagtgtga
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