Pangasianodon hypophthalmus (striped catfish): 113544535
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Entry
113544535 CDS
T05759
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1
KO
K17890
autophagy-related protein 16-1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04136
Autophagy - other
phyp04140
Autophagy - animal
phyp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113544535 (atg16l1)
04136 Autophagy - other
113544535 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
113544535 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113544535 (atg16l1)
03029 Mitochondrial biogenesis [BR:
phyp03029
]
113544535 (atg16l1)
Membrane trafficking [BR:
phyp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
113544535 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
113544535 (atg16l1)
Mitochondrial biogenesis [BR:
phyp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
113544535 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG16
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
WDR55
KASH_CCD
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
CCDC39
Beta-prop_IFT140_1st
Beta-prop_EML
PUMA_CC
CLIP1
HALZ
Beta-prop_DCAF4
Lectin_N
DUF6212
DUF4472
nos_propeller
NET2A
T3SS_needle_F
Sec10_N
TMA17_helical
Motif
Other DBs
NCBI-GeneID:
113544535
NCBI-ProteinID:
XP_026799174
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MAMAGRRVECVWKRHVAEQLKQRDRVQRQAFEEIIQQYNRLLEKSDLQAVLSERLQTEKY
EPQNRHDLSPGAESSRCDMLQQEMSQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKD
KEIQNNEAKMLEYQQQISQLEGDCRELRNCLSDLERANQTLRDEYDALQITFSALEEKLR
KTTEDNQELVTRWMAEKAQEANRLNAENEKDCSSVSRRRSLNSHGSPPDNAETPSGGCAD
VRVPSTALHVFEAHDGEVNAVRFSPGSRQLATGGMDRRVKLWEVMGGRCEYKGALMGSNA
GITSIEFDSTGSYLLAASNDFASRIWTVDDYRLRVSLSLCHTHTHTHTHTYYCLAVAVGY
QMILDKGHSSSVNAVSWSPSGSYVLSVEKSSKAVLWSDM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcaggtcgcagggtggagtgtgtgtggaagaggcacgtggcggagcagctg
aagcagagggaccgtgtgcagagacaagcttttgaggagatcatccagcagtataacagg
ttgttggagaagtcggacctgcaggccgtgctctcagagaggctgcaaacagagaaatat
gaaccacagaacagacacgatctcagcccgggggccgagtcgagccgctgtgacatgctg
cagcaggaaatgtctcagatgcgcatcaaacaccaagaggagctcacagagctgcacaaa
aaacgcggagagctggcccagaatgtaatcgagctgaataaccagattcaacagaaagac
aaagagattcagaacaacgaggccaagatgttggagtaccagcagcagatctcccagctg
gagggcgattgccgcgagctgcgcaactgcctgtcggacctggagcgagccaatcagacg
ctgcgggacgagtacgatgcgttacagatcacgttcagcgctctggaggagaaactgcgc
aaaaccacggaggacaatcaggagctcgtgacacgctggatggccgagaaggcgcaagag
gctaaccggctcaacgcggagaacgagaaggactgcagtagtgttagcaggcggcggtct
ctgaactcccacggctcgcccccggacaacgcggagaccccctccggaggatgcgccgac
gtccgcgtcccctccactgcactccacgtgtttgaagcccatgacggtgaggtgaatgcc
gtcaggttcagtcccggttctcgtcagctcgctacaggaggaatggaccgacgtgtaaaa
ctgtgggaggtgatgggaggtcgctgtgagtataaaggtgctttaatgggcagtaacgct
ggaatcaccagcatcgagttcgacagcacgggatcttacctgttggctgcgtccaacgac
ttcgcgagccgaatctggactgtagacgactacagactgagggtgagtctctctctctgt
cacacacacacacacacacacacacacacttattattgcttagctgtagctgtaggttat
cagatgatactcgacaaaggacacagctcctctgttaacgcagtgtcgtggtctccatct
ggttcctacgtgctcagtgtggagaagagcagcaaagccgtgctctggtctgacatgtga
DBGET
integrated database retrieval system
