Pangasianodon hypophthalmus (striped catfish): 113544650
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Entry
113544650 CDS
T05759
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04382
Cornified envelope formation
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113544650
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113544650
09142 Cell motility
04820 Cytoskeleton in muscle cells
113544650
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113544650
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113544650
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113544650
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113544650
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113544650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113544650
NCBI-ProteinID:
XP_026799385
LinkDB
All DBs
Position
Unknown
AA seq
1660 aa
AA seq
DB search
MTRPHWIASLSLPLWWLLLTHGYRQEVRAGENSKDCIQRNISSCPCPPIKGSRGSPGAVG
EEGRMGAPGPQGPQGQRGLKGRRGSEGLPGVAGPQGDTGAPGIPGNHGQDGYNGLPGATG
PHGPPGLDGCKGPRGDPGVDGYPGPNGGIGLRGCQGPKGLKGEPACKYFMIPGQRGCDGP
PGDPGPQGLPGPCGPQGAPGKPGDPGLPGRNGVSGTRGPPGDTGKAIPGPSGEEGDPGPA
GPPGPFEILEALEEYFPKGHKGDKGPEGVCGMPGCKGTIGPAGQRGEKGTAGYLGPTGEC
GSPGHSGRPGIQGEQGNPGLPGQTGCPGLKGILGDPGPQGQTTCFSYKAGYIGEQGCPGP
LGIRGEMGLMGLPGPPGPPGPSIPGPPGGPGTVGPRGFQGEKGEPGKRSTVHVPGEPGKP
GLQGPKGIQGAPGPHGSFCIPGQRGDPGAEGDRGRPGPTGIRGRKGDNGYCACEVSNIYG
HKGFPGEPGDPGAPGLHGLPGAQGEIGPDGDPGPRGSFGFPGFPGRMGMKGEKGDLYMMN
IKGQKGQSGTPGTAGYPGINGISGYSGSPGPAGDCGPEGDSFTGFPGDRGCPGNMGFKGE
RGPCGPQGPGIPGPVGLRGKEGEQGPPGQRGVVGRKGNKGDMQPCIPGSPGLRGPKGECG
DQGRIGVQGDPGPRGDDGINGPKGEKGNLGYPGPNGPTGLCGSQGDPGDVGTDGNSLSGE
PGIPGNPGPPGLKGCIGDSLVGNRGPVGPLGFEGSLGPKGVPGAPGSLGGQGSPGVPGAR
GRKGEPGGNGQPGREGSVGPCPVQCDTGEMGDSGLPGDQGCSGNPGERGVKGSAGPPGLP
GRGLKGCAGKPGPPGARGYCGPQGCPGTEGDPGDPGLKGLKGFPGQPGSDGFPGGLGECG
RQGPPGIKGDKGIDGRQGCPGEIGEKGEKGSYGFPGMPGEIIVNAVKGTKGPPGVPGLCG
LTGPQGDKGVKGQQGPNGSPGYCGPPGYENGPRGPQGPGGKPGIPGLHGFPGLKGYSGIC
GGHGDPGDPGLNGSPGNPGFPGFNGPKGERGDSIGTPGPPGLRGPHGQNGSPGPPGDQGE
SGETGPPGQCGYPGKPGPVGNRGPCGPLGVIGPPGPRGKCGAEGPSGPPGPPGTTGPSGH
CGPPGCPGPPGLRGLDGLEGVKGEPGSQGLGVPGERGPKGLTGERGCSGDPGPQGPVQQG
VKGCQGPPGLPGDAGCPGPPGPYGRACENPRQGQCGEAGFMGSDGPPGLRGPMGPAGLAI
PVQGEEGDPGPPGLPGAKGPRGDCGPSGQVGVSGPQGQKGEKGDPGLLGNPGPSGLPGTN
GNPGFKGPRGLNGDKGSAGEAGEIIHMKGRPIQGPYGHPGPPGEPGFQGLTGIQGSRGLR
GVKGSVGDQGLDGQPGSLGYTGPPGDPGETGARGLQGSQGKQGPQGDKGPAGPSERFNSG
FLLVIHSQTVVVPVCPENMSKLWEGYSLLYLEGQEKAHTQDLGQGGSCMRMFSTMPFSRC
NLHACHYSNRNDKSYWLSTNASVSTSPVSGLEIQPLISRCVVCEAPSVAVAIHSQDTFIP
RCPPNWRSLWFGYSFLMHTGSGDEGGGQSLTSSGSCLQNFFTHPFVECQGPQGTCHYFLN
LYNFWLIRLDKQDMSPDSMILKGTAEQRDHVSRCNVCLRE
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccactggattgcctcgctcagcctcccactctggtggcttttactgaca
cacgggtacagacaggaagttcgagcgggggagaattccaaggactgtatccagcgcaac
atcagctcgtgcccgtgtcctccaataaaaggttcccggggatctcctggtgctgttggg
gaagagggtagaatgggggctccaggtccacaaggacctcaggggcaacgtggactgaaa
ggacgccgcggatctgaaggacttcctggggttgctggaccacagggagatacaggcgct
ccaggaatacctggaaatcatggacaagatggatacaatggtcttcctggagctactggc
cctcacggtcctccaggattagatggctgtaaaggacccagaggagatccaggagtggat
ggctatccaggaccaaatggtggaatcggactacgaggttgtcaaggaccgaagggactc
aaaggagagcctgcatgcaaatattttatgattcccggtcagcgtggttgcgatggacct
cctggtgatcctggacctcaaggacttcctggaccttgtggcccacaaggtgcgccgggg
aagcctggagacccgggattaccgggtagaaatggtgtttcaggcactcgaggtcctcca
ggagacacaggaaaagcgattcctggtccaagtggagaggagggagatccagggccagcg
ggccctccaggccctttcgaaatacttgaggcattagaagaatatttccccaaaggacac
aagggggataaaggacctgaaggagtctgtggaatgcctggatgtaaaggaactatcgga
cctgcggggcaaagaggagagaaaggcaccgctggctatctaggacctacaggagaatgt
ggctctcctgggcattctggcagaccaggaattcagggtgaacaaggaaaccctggactc
cctggtcaaactggctgccctggactaaagggaatcttgggtgatcctggtccacaaggg
caaacaacatgtttctcttataaagcaggttacatcggtgagcaaggatgtcctgggccc
ctcggtatcagaggagagatgggattgatgggcctgccgggccctcctggtccaccagga
ccatctataccaggccccccaggcggcccagggacggtgggtcctcgaggttttcaaggt
gaaaaaggagagccaggaaagagaagcaccgtgcatgtcccaggagaacctgggaaaccg
gggcttcaagggccaaaaggcattcaaggggctcccggaccccatggatccttctgcatc
cccggccaaagaggagatcctggtgctgaaggagatagaggacgaccaggtccaacaggc
attcgtgggaggaaaggtgataatgggtactgtgcttgtgaggtcagtaatatttatggc
cataagggtttcccaggtgaacctggggatcctggtgctccaggactgcatgggcttccc
ggtgcacaaggtgaaattggacctgatggagatcctggaccacgaggaagttttggtttt
ccaggttttccaggtaggatggggatgaaaggagaaaaaggagacctgtatatgatgaac
atcaagggtcaaaagggacagtctggaacaccagggactgctggttatccaggaatcaat
ggcataagtggttattctgggtctcctgggcctgcaggtgattgtggtccagagggtgac
agttttacaggttttcctggtgatagaggttgtccaggaaatatgggcttcaaaggtgaa
agaggtccctgtggaccacaaggcccaggcattcctgggccagtaggtcttcgaggaaaa
gaaggtgagcagggacctccaggacagagaggagttgttgggcgtaaaggaaacaaaggt
gatatgcaaccctgtatacctggcagtcctggactccgtggaccaaagggagagtgtggt
gaccaagggcgcataggagtgcagggcgatccagggcctcgtggggatgatggaattaac
ggaccaaagggagagaaaggaaaccttggatatcctggtccaaatggccctacagggcta
tgtggatctcagggggatcctggagacgttggaaccgacggcaatagtttgagtggagag
ccagggatacctggcaatcctggaccccctgggttaaaaggatgcattggcgactcattg
gtaggaaatcgagggccagtaggccctttagggttcgaaggctctttaggacctaaagga
gtccctggagccccagggtcacttggtggacaaggctctcctggtgtacctggagctcga
ggtaggaaaggagagccaggaggaaatggtcagcctgggagagaggggtctgttggccca
tgtccagtacagtgcgatactggagaaatgggcgactcgggactgccaggagaccaaggc
tgtagtggaaatccaggtgaacgtggtgtgaagggaagtgccggaccacctggccttcca
ggaagggggctgaaaggttgtgctgggaaaccaggcccacctggtgctcggggatactgt
ggtcctcagggatgcccaggaacagaaggagatcctggagatcctggtcttaaaggattg
aaaggttttcctggacaacccggaagcgacggcttccctggtggcctaggtgagtgtgga
cgtcaaggaccacctggcataaaaggcgataaaggcatcgatgggaggcaaggttgtcct
ggggagataggagagaaaggagagaaaggttcctatggatttcctggtatgccaggagag
attatcgtgaatgctgtaaaggggacgaaggggccaccaggagtgcccgggctatgcggc
ctcactggtccccaaggtgataaaggtgtgaagggacaacaaggtccaaatggttctcca
gggtattgtggacctccaggttatgagaacggtcctcgggggccacaaggtcccggtgga
aagccaggtatacctggactccatggttttccagggttaaaaggctatagcggaatttgc
ggaggacatggagatccaggtgacccaggcttgaatggatctccaggaaacccgggtttc
cctggatttaatgggccgaaaggtgaaagaggagattctataggtacaccaggacctcca
ggtctaagaggcccacatggacaaaatggctccccaggtcctccaggggatcagggagag
tcaggagagacgggtccacctggtcagtgtggatatcctggcaaacctggtcctgttgga
aatcggggaccatgtggacctctgggtgtaattggtcccccaggacccagaggaaaatgt
ggcgccgagggtccttcagggcctcctggacctcctggaactactggaccatcaggccac
tgtggcccaccaggttgtccagggccaccaggactgcgtggattggatggattagaggga
gtgaagggtgaaccagggtcacagggactaggtgtacctggggaaagggggcctaagggt
ctgacaggtgaaaggggttgttcaggagaccctgggccacagggtcctgtccagcaaggg
gtcaaaggctgtcagggcccgcctggattgccaggtgatgctggttgtcctggtcctcct
ggtccttatggcagggcctgtgagaacccaagacaaggacagtgtggtgaagcaggcttt
atgggtagtgatggcccaccaggacttaggggacctatgggaccggcaggactggcaata
cctgtgcagggggaagagggggacccaggtccaccgggtcttcccggagctaaagggcca
aggggtgattgtggtccctctggccaggtgggggtttcaggcccccaaggacagaaaggt
gagaaaggagatccagggcttcttggaaatcctggaccttctggcttaccaggaacaaac
ggcaaccccgggttcaagggccctagaggactaaacggagataaaggttctgctggagaa
gcaggggaaattattcatatgaagggcagaccgattcaaggtccatatgggcatcctggg
cctcctggtgagcctggctttcaaggacttacaggaattcagggcagtagggggctgaga
ggggtaaaaggctcagtgggagatcaagggttggatggtcaacctggctcccttggctat
actggacctcctggagacccaggagagacgggtgccagaggtttacaaggcagtcaaggc
aaacaaggacctcaaggggataaaggtcctgctggcccctctgagaggttcaactctggc
ttcctattggtcatccacagccaaacagtagttgtacctgtgtgtcctgaaaatatgtcc
aagctgtgggagggatatagcctactgtacctggaggggcaagagaaagctcacacacaa
gacctgggtcagggtggttcctgtatgcgtatgttcagcactatgcccttttcgcgctgc
aacctgcatgcctgccactattccaaccgcaatgacaaatcctattggctttccaccaat
gcttcagtatccacctcgcctgtgtctgggctggagatccagccactcatcagcaggtgt
gtggtgtgtgaggctccatcagtggccgttgccattcacagccaggacacattcataccc
cggtgtccgccgaattggaggagcctctggtttggatactcattccttatgcacactggg
tctggagatgaaggaggcggccagtctctcacatcgtcgggaagctgcctacagaatttc
ttcacgcatccatttgtggagtgccagggcccacagggcacatgccactacttcctcaac
ctctacaacttttggctcatacgtttggataagcaggacatgagcccggattcgatgatc
ctaaaaggaacggccgagcagcgtgatcatgttagccgatgcaacgtctgcttgagggag
tga
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