Pangasianodon hypophthalmus (striped catfish): 113544652
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Entry
113544652 CDS
T05759
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113544652
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113544652
09142 Cell motility
04820 Cytoskeleton in muscle cells
113544652
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113544652
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113544652
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113544652
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113544652
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113544652
NCBI-ProteinID:
XP_026799387
LinkDB
All DBs
Position
Unknown
AA seq
1658 aa
AA seq
DB search
MRATLLGILLLGFVTLAHAEECGRHGKISCDCTRGEKGEPGFPGLFGSKGEDGISGDKGQ
PGPMGPMGDPGPQGIQGPKGSQGLPGNPGLWGAPGRPGLPGNEGPQGPPGSPGCNGTKGD
RGPPGPPGIFGAVGIQGANGPPGPKGDTWYFPFPKDVMGQNGFPGRDGPKGEPGPQGNCG
LTGPMGCEGPMGEIGCPGLPGEKGVMGRSEGPVLQGSKGVRGLPGVPGRRGIKQFATGHR
ELKGDPGDPGDRGSPGIPGQQGPCGPKGQKGSTGDPGPLGEVGPNGLQGEYGPNGYPGVR
GNTGLPGAPGSKGEKGDRGCAGPPGQCVPCNTAQKGRRGPSGLPGHPGLKGPQGVSGFPG
NFGIPGPGVPGNLGEPGPPGFSGIKGEKGERGSQLIGPVGPYGPQGKRGSPGDPGPKGLP
EIHKRQGPLGLKGKKGNQGPEGEKGKPGEQGEKGDVCNLCLFSGPENGPPGRSGERGAQG
DPGLNGEPGSTGSKGIKGQEGPPGHPGLTGAPGAQGHQGQKGEPGFIGPGDNGDHGDPGP
QGYPGRNGQDGIPGKTGLKGPQGEKGNPGPFGAKGHQGDPGPDGLPGLPGKMGVQGCPGV
GAPGEPGEKGCFGVRGLPGDPGDPGEKGDPGMVYVTPGDQGKCGTKGPNGPPGQPGCLGP
KGLCGLPGPCGIKGEEGLSQPGLQGPPGCKGEKGIQGCQGPPSIGVPGCSGPIGQCGLPG
LKGDSVWGPPGLAGRRGPPGDDGMCGPAGESGCPGSPGVSGQSGRDGCPGPKGAAGFDGP
PGVSGPLGFCTSGQPGNKGVQGQKGMPGMPGCRGQKGIQGEPGCQGQSLLGLAGPFGTPG
CNGKDGLPGPAGPKGFKGTNGMPGGSGPRGSDGPPGSQGYPGPPGNPGCPGRPGPKGFAG
SNGQPGYRGSQGPKGEQGYQGPKGEPQTVCNPGDPGDPGDIGLRGLTGLKGSKGIRGTTG
SCGGHGLQGSAGLPGPPGERGWEGLAGEPGVPGCVGEVGPPGPPGAKGEKGTPGLNGTPG
DSGTSGVNGPKGIKGEPSSPGPGEQGSPGDKGEAGKQGFKGKKGERGMCGPVGRPGAEGF
SGEVGETGRSGQPGPPGLPGEEGFDGQPGPPGCPGPKGPPGCSGSPGNPGPPGLKGNQGR
DGIPGLPGEKGSAGAPGCGTPGPPGIRGQSGCKGEPGPMGKIGPPGPCGLVGDPGPSGTP
GPSGPPGNPGPQGLCVDGPKGERGPTGQPGPQGRTGICGPPGPPGLGVKGEKGNTGTSGL
NGVCGYPGDTGPQGIPGIPGSPGYPGCKGEKGLKGETGPRGQRGQDGSRGPPGLEGQKGR
KGRPGTRGEVVYYDNILLSGERGLPGAPGERGPTGAPGVPGHTGPPGARGPKGLPGLNGI
PGEQGLLGQKGNRGLPGLTGALGVIGDDGRKGSRGPPGTCVPNKASGSFLFTRHSQTREV
PSCPSGSSEIYSGYSLLFINGNNRGHGQDLGTIGSCLQMFSTMPFLFCNGGNICRYASRN
DYSYWLSTDAQMPSDVPFVSDDSLEQYVSRCSVCEAPGNVIALHSQTSVAPSCPIGWQPL
WQGYSFVMQTGVGSEGSGQPLSSPGSCLENFQKIPFIECHGRGTCNYYSNSYSYWLAGLD
PSQMFSKPSPQTVKEGYPSIISRCQVCMKEHLSCNQTS
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgacactcctgggaatattgctcctcggatttgtgacgctcgcgcacgccgag
gaatgtggacgtcatgggaagatcagttgcgactgcactagaggcgaaaagggcgagcca
ggttttccaggtctatttggatcaaaaggagaagatggaatttcaggagataaaggccaa
cctggacccatgggccccatgggtgacccaggacctcaagggatacaaggaccgaaaggc
tcacagggacttcctgggaatccaggattatggggtgctccaggacggcctggattacca
ggaaatgaagggcctcagggaccacctggtagcccaggatgcaacggcacaaagggtgac
cgtggtccacctggacctccgggaattttcggagctgtcggcatacagggagcaaatggt
ccccctggccctaagggtgacacgtggtacttcccttttcctaaagatgtgatgggacaa
aatggttttccaggtagagatgggccaaagggtgagcctggaccgcaaggtaactgtgga
ctaactggaccaatgggatgtgagggacctatgggagaaataggatgccctggtcttcca
ggagaaaagggtgtaatgggacgttcagaaggacctgtcctgcaaggttcaaaaggcgtg
agaggtcttcctggcgtacctgggcggaggggtatcaagcaatttgcaacaggacacaga
gagctcaaaggagatccaggggatccaggagacagaggcagtcctggaattccaggccag
caagggccttgtggccctaaaggacagaaaggaagcacaggagatccaggacctctgggt
gaagttgggccgaatgggcttcagggagaatatggtcctaatggctatcctggagtcaga
ggaaatacagggcttcctggggcccctggttcaaagggggagaaaggtgaccgtggttgc
gctggtcctccaggacaatgtgttccgtgcaatacagctcagaaaggccgaagaggacct
tcgggtttacctggacatcctggccttaaaggtcctcaaggtgtaagtggttttcctgga
aatttcggcattccaggaccaggtgtacctggaaaccttggggagcctggtcccccaggc
tttagcggaattaagggtgaaaagggagaacgaggatctcaattgatcggaccagtggga
ccttatggacctcagggaaaacgtgggtctcctggtgatcctggtcctaaaggactacca
gaaattcataaacgtcaaggcccattggggttgaaaggaaagaaaggcaatcaagggcct
gagggtgaaaagggaaaaccgggggaacaaggtgagaaaggagatgtctgcaacctgtgc
cttttttcaggccctgaaaatggacctccagggcgatctggtgaacgtggtgcacaagga
gatccaggtttaaatggagaacctggcagcacaggatcaaagggtattaaggggcaggaa
ggtccacctggccatccgggtttgactggtgctccaggcgcccaagggcatcaggggcaa
aaaggagaacctggctttataggacctggagataatggggatcatggtgacccaggacca
caggggtacccagggaggaatggacaggatgggataccaggaaaaacaggacttaaaggc
ccacagggagagaagggcaatccgggtccttttggggctaagggtcaccagggtgaccct
ggaccagatggattaccaggactccctggtaaaatgggagttcagggctgccctggggtt
ggagcaccaggggaacctggtgagaagggctgctttggtgtgcgtggcctgccaggggat
cctggagatccaggtgagaagggtgaccctggtatggtgtacgtaacacctggagaccag
gggaagtgtggaacaaagggtcctaacggtccacctgggcaaccagggtgcctgggaccc
aaagggttatgtgggcttccaggaccttgtggcataaaaggcgaagaaggactgtcgcaa
ccaggattacaaggaccgcctggttgtaaaggtgaaaaaggcattcaaggttgtcaaggt
ccacctagcatcggggtacctggttgctcaggacccataggacaatgtggattgccaggg
ttaaagggtgatagtgtttggggccctccagggctcgctggcaggcgagggcctccaggg
gatgatgggatgtgtgggcctgctggtgaatcaggttgtccaggaagtcctggagtttct
ggacagtcagggagagacggatgcccagggcctaagggtgccgcagggtttgatggaccg
ccaggggtgagtggtcccttgggattctgtacttctgggcagccaggtaacaaaggagtc
caaggtcagaagggaatgcctggaatgccaggatgtcggggtcagaaaggtatacagggt
gagcctggatgtcaggggcaaagtttacttggattagccgggccatttgggacacctggt
tgtaatggaaaagatggtctacctggtccagctggaccaaagggatttaaggggacgaat
ggcatgcctggtggctcaggcccacgggggagtgacgggcctcccgggagccaaggatat
cctggacctcctggaaaccctggatgtcctggacgacctgggcctaaaggttttgcaggc
agtaatggacaaccaggttacagaggttcacaaggcccgaaaggggaacaggggtatcaa
ggtcctaaaggagaaccacaaactgtctgcaaccctggagacccaggagaccctggagac
ataggtcttcgtggtctgactgggcttaaagggagcaaaggaatcagaggaacgactggc
agctgtggcggacatggattacaaggcagtgctgggctaccgggtcctcctggagaacga
ggctgggaaggcttggcaggtgaacctggtgtccctggctgtgttggagaagttggacct
ccgggtcctccaggtgccaaaggtgagaaggggacaccaggtctcaatggaacaccagga
gactctggtacttcaggagtaaatggcccaaaagggatcaaaggtgaaccaagtagtcct
ggaccaggagagcaaggaagccctggagacaagggtgaagcaggcaaacaaggctttaaa
ggaaagaaaggagaaagaggaatgtgtgggcctgttggacgtccaggagcagaagggttt
tccggagaggttggagagacaggacgatcaggacaaccaggacccccaggattgcctgga
gaagaaggttttgatggacagccaggccctccaggttgtccgggaccaaaaggcccacca
ggttgttctgggtcaccgggcaatccaggtccgccaggtctaaaaggaaaccagggcagg
gacggcattcctggacttcctggagaaaaagggagtgcaggagctcctggatgtggaact
ccagggccacctggtatcaggggtcaatcaggttgtaaaggggaaccaggacccatgggg
aaaattggacctccaggaccatgcggtctagtgggagacccagggcccagtgggactcca
gggccatcaggaccccctggaaatcctggtccacagggtttgtgcgtggatggacccaag
ggagagcgaggccctactggacaaccaggaccacaagggcgcacagggatatgtggtccc
ccaggaccacctggcctaggcgttaagggagaaaagggcaacactgggacttccggacta
aacggagtgtgtggttatccaggagacactggcccacaagggattccaggtattcctggg
agccctggttaccctggttgcaaaggagaaaaaggactaaagggtgaaacaggacctcga
ggtcaaagaggacaggatggctcacgtggcccaccaggattggaaggacagaaagggcga
aaaggacgaccaggtacaagaggggaagttgtttactacgataatatattactttccgga
gagcgtggtctgcctggagctccaggagagagaggacctacaggagcacctggtgtacca
ggacatacagggccaccaggagcccgtggtcctaaaggactccctggcctaaatggcatc
cccggtgaacaaggtttacttggacagaaagggaacagaggattgccagggctgacagga
gctttgggtgttattggtgatgatggtaggaagggttccagaggtcccccgggaacctgc
gtgcccaacaaggccagtggtagcttcctgttcaccaggcacagtcagacacgagaggtc
ccgtcctgcccttctggatccagtgaaatctactccgggtactcactcctttttatcaac
ggcaataaccggggacacggccaagatcttggcactatagggagctgtctacagatgttc
tccaccatgcccttcctcttctgtaatgggggaaacatctgtcgctatgcctcccgaaac
gactactcctactggctgtccactgacgcacaaatgcccagtgacgtgccgtttgtctca
gatgattcactggagcagtatgttagcaggtgttcagtatgtgaggctccagggaacgtg
atagcattacacagtcagaccagtgtggccccatcatgccccatcggatggcagcctttg
tggcaaggctactcttttgtcatgcaaacaggtgtgggttcggagggctcgggacagccc
ctgtcctctcctggctcttgtttagagaatttccagaagattccctttatcgagtgtcat
ggccgtggcacttgtaactactactcaaattcctacagctactggctggctggactggat
cctagccagatgttcagtaaaccatccccacagacagtaaaagaaggctatccaagcatc
atcagccgctgtcaggtgtgcatgaaggagcacttgtcttgtaatcagacatcctga
DBGET
integrated database retrieval system
