Pangasianodon hypophthalmus (striped catfish): 113544775
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Entry
113544775 CDS
T05759
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113544775
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
113544775
Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
113544775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
113544775
NCBI-ProteinID:
XP_026799514
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MSSNYSVSLIGPSPWGFRLQGGKDFSMPLTISRLTDGGKAAKAKISIGDIVLSIDGIATN
TMTHLEAQNKIKACTGNLSLTLQRASSVPKGDVPKDESPEIIKPVPISHPPAPAPSASPT
NPPPSSAYNKTARPFGASSNFRAVSPTSTPAAPKASIPSASSAFTPAAPSQQPPPQPAQG
PQPPFPLASSSASRTVSSLNPAHKPGSAYSPFSHSSSSSSSGSSSPARVTGPAPSSAPTV
PQPSVYNTPFNLYSNENACEVAMGQRRGLLEQQGGVEHQNGVPRKPIPDTELVVNHGSHL
SDASKKRLIEDTEDWRPRTGTSQSRSFRILAQITGTENEQAHESSPGKNEAVEDVHANTH
ATSVVKTMTKVPRTGNGVPPPTTVTTKSWQSGNTAGLPKAGVPAVHTGRVTGGVPKGPDR
PAPQPHPKDQDSLVQRAEHIPAGTRTPMCGHCNMVIRGPFLVAMGKSWHPEEFNCAHCRS
SLAEVGFVEERGAVYCEHCYEQFFAPTCCRCQQKILGEVINALKQTWHVYCFLCTSCQQP
IRNNTFHLEDGQPYCERDYYNLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCSVCST
SLEGQAFFSKKDKPLCKKHAHTVKI
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaattacagcgtgtccctgatcggaccctcgccctggggcttcagactgcag
gggggcaaagacttcagcatgcctctcaccatctccagattgacggatggaggaaaagcg
gccaaagcgaagatcagcataggagatatcgtgctgtccatcgacggcatcgccacaaac
accatgactcacctggaggctcagaacaagatcaaagcctgcacaggcaatttgagcctc
accctgcagagagcgtccagcgttcccaaaggcgatgtacccaaggatgaatcaccagag
atcattaaacccgtgcccatcagccacccacctgctcccgcccctagtgccagccccacc
aaccctcccccaagtagcgcatacaacaagacggcccgcccattcggcgcatcttctaat
tttagagcagtcagcccgacctccactcctgcagcacccaaagcctccatcccttctgcc
tcctcagctttcacccccgctgctccctcccagcaacctccaccacaacccgcacaaggc
ccacaacctcccttcccactggccagcagctccgcctcccgcacagtctcctctcttaac
cctgcccacaaacctggctccgcttactcccccttctctcactcctcttcctcctcatcc
tctggctcgtcttcgccagccagagtgacaggccctgccccctcatctgctcccactgtg
ccacagccttcggtctataacacgccattcaacctgtactccaatgagaacgcatgtgag
gtggctatgggtcagaggcgtggcctactggagcaacaaggtggagtggagcatcagaat
ggagttcccaggaagcccatcccagatacggagctggtggtgaaccacggctctcacctg
agcgacgccagtaaaaagcgtctgatcgaggacacggaggactggcgcccacgcactgga
acctctcagtcccgctccttccgcatcctggcacagatcacgggtacagagaacgaacaa
gcccacgagagcagtcccggaaagaatgaggctgtagaggacgtccatgcgaacactcac
gccacgtccgtggttaaaaccatgaccaaagtgccacgcactgggaatggagtccctcca
cctaccactgtgactaccaagagctggcagtctggaaacactgcaggacttcctaaagca
ggtgtgccagcggtgcatacagggcgggtgactggcggtgttccgaagggtcctgaccgc
cctgcgccccagcctcaccccaaagaccaagattcactggtgcagagagcggaacacatc
cctgctggaacccgcactcccatgtgtggtcactgcaacatggttatcaggggtccgttc
ctggtggctatggggaagtcgtggcacccggaggagtttaactgcgctcactgccgcagc
tctctggccgaggtgggcttcgtggaggagcgcggcgctgtttactgcgagcactgctac
gagcagttcttcgcccccacctgctgccgttgccagcagaagatcctcggggaagtcatc
aatgccctgaagcaaacctggcatgtgtattgcttcctgtgcacctcctgccagcagccc
attcgcaacaacaccttccacctcgaggatggacagccctactgcgagagagactattac
aatcttttcggtaccagttgccatggctgtgacttccccattgaggcaggggacaaattt
ctggaggctctgggcttcacctggcatgatacctgcttcgtgtgttcggtgtgcagcacc
agtctagagggtcaggctttcttctccaaaaaagacaagccgctgtgcaagaagcacgct
cacactgtcaaaatctga
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