Pangasianodon hypophthalmus (striped catfish): 113544782
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Entry
113544782 CDS
T05759
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113544782 (sbno1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113544782 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113544782
NCBI-ProteinID:
XP_026799523
LinkDB
All DBs
Position
Unknown
AA seq
1407 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDLFDIDSQDTAQSPASQQSVSKNVLDIGLGNEAAGIVGLE
PAVPPTPTVTIRQKPQPSTTTFVLNQLNQLPSLGTIVVTKPSMGTSSRQTITVPKVVQTQ
SSAQRSSSSSSTTATVCSVVPPNREQIKLKDLLRTSGVKTNSLGELMKLKPPPDIAQPVA
TATGTKIILVSTKLMNKQVEVNNGVKKEVSSKDVARIWANEEIKIRSSSPVNKLHVMKEE
EEPEEEEEEELGHAETYAEYMPMKLKIGERHPDPVVETSSLSSVSPPNVWYRLSIPEETI
DRGWLSALQLEAVTYASQQHETFLPNGDRAAYLIGDGAGVGKGRTIAGIIYENYLLGRKR
SLWFSVSNDLKYDAERDLRDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLI
GESQTGGKYKTRFKQLLHWCGDDFDGVIVFDECHKAKNVCPIGSSKPTKTGLAVLELQNK
LPKARVVYASATGASEPRNMAYMNRLGIWGEGTPFKEFSNFIQAVERRGVGAMEIVAMDM
KLRGMYIARQLSFQGVTFKIEEVPLTQNYIKMYNKSVRLWVSAREKFQQAANLMDAEQRM
KKSMWGQFWSAHQRFFKYLCIASKVRRVVQLAREEVKNGKCVVIGLQSTGEARTLEALEE
GGGELNDFVSTAKGVLQSLVEKHFPAPDRQKLFSLLGIDLSAKKTPSPAETKEEQKGKKR
KGAEVKKGAKKSRKSGGLSGSSSDESNSEDSDKDDSDDSFNSVSSGDDDDEDDFNPFKDD
SSEDEEDDPWLIRKDSKKSKEKKNKKKKKSIDPDSIHSALLASGLGSTRPAFTTPVVKST
SNSTVAPAKSEPEESSCVTSNDAVEDAQQMKRELLDQLEKLAEDLPPNTLDELIDELGGP
ENVAEMTGRKGRVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASS
GISLQADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQR
FASIVAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVNLDAPLVSPP
SYFEGDFFKEIRNGLIGVGLINVEDRSGVLSLDKDYNNIGKFLNRILGMEVQQQNALFQY
FSDTLNAVIQNAKKNGRYDMGILDLGSGDEKVKKIDVKKFLTPGYSTSGHVELYTVSVER
GMSWEDATHIWAEQSGPDDGFYVQVRNNKKIAIMVKEVNTKKRLFMVYRPNTGKQLKLET
YADIRKRCKKVLSDEAKQCWIDQYKSSADVCSHAYWRGNCKKASVGLQCEIGLRCRTYYV
LCGSVLSVWTKVEGVLASVSGNNMKMQIVRLRTEDGQRIVGLIIPANCVAPLTNILSSSD
QSQQLAVQQQQMWQQLHPQSLSHSFNT
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggatccaggacaagatttgcttcttgcagcccttagcgaaagtggaatctgcccaaat
gacctttttgacattgattctcaggacactgctcagtcccctgcctctcaacagtcagtc
tcaaagaatgtccttgacattggtcttggtaatgaagcagctggaattgttggacttgaa
cctgctgtgccacccacacctacagtcacaatccgacagaagcctcagccctcaaccacc
acgttcgtcttaaatcaactgaatcaactgccatcactgggaaccatcgtggtcacaaag
ccctcaatgggcacctcctccagacagaccatcacagtacccaaggtggtgcagacgcaa
tcgtcagctcagcgaagctcgtcctcgtcctccactaccgccacggtgtgcagcgtggtc
cctccgaatcgggaacagattaagctgaaagacctgctccggaccagcggtgtgaagacc
aacagccttggtgaacttatgaagctgaagccgccacctgatattgctcagcctgttgct
acagctacaggcacgaagattattttggtctccacgaagttgatgaataaacaagtggag
gtaaacaatggtgtgaagaaggaggtgtcgagcaaagatgtcgccagaatctgggcaaat
gaagaaatcaaaattcggagctcttcacctgtaaataagttacacgtaatgaaggaggag
gaggagccagaggaggaagaggaggaggagttaggacacgcagaaacatacgctgaatac
atgccaatgaaattgaaaataggagagcgacatcctgatcctgtagtagagaccagctcc
ctctcaagtgtcagccctcctaatgtgtggtacaggctttccattccagaggagacaatc
gacagaggctggctatctgctcttcagcttgaggccgttacatatgcttctcagcaacat
gagacattccttccaaatggagacagagcagcttacctgatcggtgatggtgctggtgtt
ggaaagggaagaactattgctggaatcatatatgaaaattaccttctgggcaggaaaaga
tctctttggtttagcgtctcaaatgacttgaagtatgacgcagagagagacttgagagat
attggtgcaaagaacatccaggtccattctttaaacaagttcaaatatggaaaaatctca
tcaaaacacaacggaagtgtgaaaaaaggtgtgatctttgctacgtactcgtccctgatt
ggagaaagccaaacaggtggaaagtataagacaagattcaaacaattactccactggtgt
ggggatgattttgatggtgtgatagtctttgatgaatgtcacaaagccaaaaatgtttgc
ccaattgggtcatcaaaacccacaaagactggactggctgttcttgagctccagaacaaa
ctgccaaaagcacgtgtcgtctatgccagcgctacaggagcctctgagcctcggaacatg
gcttacatgaatcgtcttgggatctggggggaaggaacgccttttaaagaattttctaat
tttattcaagctgttgaaagaagaggtgttggtgccatggaaattgttgccatggatatg
aaattgagaggaatgtacattgctcgacagctgagcttccagggtgtgacatttaagatt
gaggaagttcctctgacacaaaactacatcaaaatgtataacaagtcagtccgtctgtgg
gtgagtgcacgcgagaaattccaacaagcagctaacttgatggacgccgaacagcgcatg
aaaaagtcaatgtggggacagttctggtctgcacaccaaaggttctttaagtacctgtgt
atcgcttcaaaagtgcgccgagtggtgcagcttgcccgagaggaagttaagaacggaaag
tgtgtggtcattggcctgcagtcaaccggtgaagcacgaacactcgaggctttggaggaa
ggtggaggcgagctcaatgactttgtctctactgcaaagggtgtcctgcagtcactggta
gagaagcacttccctgccccagacagacagaagctcttcagcttactgggtattgattta
tctgcaaagaaaacaccttcaccagcagaaactaaggaggagcagaagggcaagaagagg
aaaggtgcagaggttaaaaaaggtgcgaagaagtctcgtaaatctggagggctttcaggc
agcagttcagatgagagcaattcagaagactctgacaaagacgacagtgacgacagcttt
aactcagtcagctcaggggatgatgatgatgaagatgacttcaaccccttcaaggatgat
tctagtgaagatgaagaagatgatccttggctaatccgtaaagactctaaaaagagcaaa
gaaaagaagaacaagaagaagaaaaagagcatcgacccggattccattcatagtgccttg
ttagcctctgggcttggttcgaccaggcctgctttcacaacacctgttgtaaaatctacg
tccaacagcactgttgctcctgctaaaagtgaacctgaagaaagtagttgtgtgaccagt
aatgatgcagtggaagatgcccagcagatgaagagggagctgctagatcagctagagaaa
ctggctgaggatctgccaccaaacacattggatgagcttattgatgagttgggaggccct
gaaaatgttgcggagatgactgggcgtaaaggtagagtggtcagcaatgatgacggcagc
atctcgtacgaatcaagatcagaactggacgttcctgtagaaatcctgaacctcacagag
aaacagaggttcatggatggagagaagaacatcgctataatctctgaggcagccagctct
ggtatttcacttcaagcagaccgtagagtgaagaatcagaggagaagggtgcacatgact
ttagagttgccgtggagtgcagaccgggctattcagcagttcggtagaacacacagatct
aaccaggtcactgctcctgagtatgtatttctgatatctgaacttgctggagagcaaaga
tttgcctccattgttgccaaaagactagagagcttgggcgctctcacacacggagaccga
agagccacagagacgagggacctcagtcgattcaactttgacaacaaatatggcagaaac
gctcttgagattgttatgaagtccattgtcaatttggatgctcccttggtctccccaccg
tcttatttcgaaggggatttctttaaagaaatccgcaatggtttaattggtgtggggctg
attaatgtggaggataggtctggagttctctcactggataaagactacaacaacattgga
aaattcttaaaccggatccttggcatggaggtccagcagcagaatgccctcttccagtat
ttctctgacactttgaatgctgtcattcagaatgctaaaaagaatggcagatatgacatg
ggaattctggatttgggctctggggatgagaaggttaaaaagattgacgtgaaaaagttc
ttgacgccaggttactccacatcaggccatgttgaactttatacagttagtgtggagagg
ggtatgtcatgggaggacgctacccatatctgggcggaacagagcggaccagacgacggc
ttctacgtgcaggtacggaataacaagaaaatagctatcatggtcaaggaagtcaacaca
aaaaagagactctttatggtgtacagaccaaatacaggaaaacagctcaaactggagaca
tacgcagatataaggaagcgatgtaaaaaggttctttcagatgaggctaagcagtgctgg
attgatcagtacaaatcttcagcggatgtttgctctcatgcctattggcgtgggaactgt
aagaaggcgtcagtggggctgcagtgtgaaataggtctgcgttgccggacgtactatgtc
ctatgtggctctgtcctcagtgtgtggaccaaagtagagggtgtcttagcctctgtaagc
ggaaacaacatgaagatgcagattgtccgtttgagaactgaggacggacaacgaatagta
ggtctgatcattccagcaaactgcgtggctcccctcaccaacatcctgtcctcgtcagac
caatcgcagcagctggccgtgcagcagcagcagatgtggcagcagctgcacccacagagc
ctcagccactcattcaacacatag
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