Pangasianodon hypophthalmus (striped catfish): 113544792
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Entry
113544792 CDS
T05759
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113544792 (ddx56)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113544792 (ddx56)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113544792 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
113544792
NCBI-ProteinID:
XP_026799548
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MTSERLQFHEMGLDDRLLKAVADLGWAQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPLIQRILTSKQTVREQAVRALVLVPTKELGQQVQAMIRQLTAYCARDVRVADISGKAE
LSAQRPILMEKPDVVVGTPSRVQAHIKAQNLALHALEMLVIDEADLVFSFGFEADLKNLI
CHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQYSVKCEEEDKF
LLIYTLLKLGLVRGKTLIFVGSLDRCYRLKLFLEQFSIPSCVLNSELPVHSRCHIISQFN
QGFYDYIIATDEQGLDNPTADSQSAESSGKKKKKKKTKSKTGKDKEYGVSRGVDFQNIAN
VINFDFPASVESYIHRVGRTARADNKGTALTFISHSELSLLEEVESALTGDSGNCALKPY
GFKMDEIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKMYFEDNPRDLQLLRH
DKDLHPAIIKLHLKNVPDYLIPSTMKNLVNPLSRRKKKKLKPNPKGVVKTAFKKNIRGKN
PLKSFRYTGKARKQNNKS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacttccgagaggcttcagttccatgagatggggttagacgaccgtcttttaaaggcg
gtagctgacctcggatgggcccagccgactctcattcaagaaaaagccattccactggct
ctcgaagggaaggatcttttggcaagagctcggactggttcagggaagactgccgcctac
gctgtaccgctgattcagcggatcctcacctctaagcagacggtgcgagagcaggcagtg
cgagctttagtcctggtacccaccaaagaactgggacagcaggtacaggccatgattcgc
cagctcaccgcctactgtgccagagacgttcgtgtggccgacatctcaggcaaagcagag
ttatcagcgcaaaggccaattctgatggaaaagccagatgttgtggtgggaactccatct
cgggtgcaagcccatatcaaagcccagaacttggcgctgcatgctctggaaatgctcgtc
attgatgaagcagacctcgttttctcttttggcttcgaggctgatcttaagaacctcatc
tgtcacttgcctaagatctatcaggctttcttaatgtctgctacactcaatgacgatgtt
caggccttgaaggagctcgttctacacaaccctgtgacgctgaagctacaaggctcccag
cttccagacagctcgcagctgcagcagtacagtgtgaagtgtgaggaggaggacaagttt
ctcctcatctacacactcctcaaacttggcctggtgcgaggcaagacgctcatattcgtc
ggcagtctggatcgctgttacaggctcaagcttttcttggagcagttcagcattccttcc
tgcgtcctcaactccgaactccccgtgcactcgaggtgtcacatcatatcacagttcaat
cagggattctatgattacatcatagccacagatgagcaagggcttgacaacccgactgct
gattcccaaagtgccgagagcagtgggaagaagaagaagaagaagaagacaaagagtaaa
acaggcaaagataaagaatatggtgtgtccagaggcgtggacttccagaacatcgcaaat
gtcataaactttgattttcccgcttctgttgaatcctacatccacagagttggcaggact
gcaagggcagataacaaaggcacagctctcacattcatctcccattcagagctgtcgttg
ctggaggaggttgagagtgctctcacaggagacagcggaaactgcgccctgaagccatac
gggttcaaaatggatgaaatagaaggatttagatacagatgtcgggatgcgatgaggtct
gtgaccaagcaagcagtgaaggaagccagattaaaggagatcaagcaggagctgctcaac
tcggagaagcttaagatgtacttcgaagacaacccgagagatctgcaactgctccgtcat
gacaaagacctccatcctgcgatcatcaaactccacctgaaaaacgtgccagactacttg
attccttcaacaatgaaaaatctggtcaaccccctctcacgccggaagaagaagaagctc
aagcccaacccaaagggagttgtgaaaactgccttcaagaagaatatcagagggaagaac
ccactgaagagtttccgctacactgggaaagccaggaagcagaacaacaaatcctaa
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