Pangasianodon hypophthalmus (striped catfish): 113545107
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Entry
113545107 CDS
T05759
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113545107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113545107
03021 Transcription machinery [BR:
phyp03021
]
113545107
03036 Chromosome and associated proteins [BR:
phyp03036
]
113545107
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Helix-turn-helix
ARID
113545107
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113545107
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113545107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
SR-25
Motif
Other DBs
NCBI-GeneID:
113545107
NCBI-ProteinID:
XP_026800062
LinkDB
All DBs
Position
Unknown
AA seq
2139 aa
AA seq
DB search
MAAQVASVPAASNNNKSKTLSGVLGQDLNSGKRAGGIGDVRSASNNNNNNTNNTTTTNNN
VDRRCDDLSRTGGSVTTSVSSSSSSSSSSSSSSSSSSSSSMSSSSPGAETGFVVNHKLKH
APGDIRFQQHSNQRAVQRNHSSQDASDQQRLGGRESAVGGSSEQHMLRKSAEDQPCRAAE
PMSRSRYEQGNLAPSLQASHAQGAGGGGGGGGGKTPVSDFNHYFGSSRSGPCFDQHGAQQ
GFGTLMYPATSNHVEASPNSHEGQQKSQYGAYAGYGAAGYSNPASSQAKCAPVGSMNNAG
GFVRFPGQSQHPSGATPTLNQLLTSPGPMMRYYEYSSGKDASSQYGCGGSGWPGQRANPG
AANSAQSATRNQVGSMDFMVMKRSQMYGMSSGPYSQQQQGVPYPSQPYGSPSTHRYPMAM
QGRGQMSMGAMPYPQQQVPAHFGQQGMGGYCPQGQPGYYSQSQQSQQPQQQAPYSQPRTT
TQQETQESYGNRSQPSGNAGKPNHDEMGLIQQDRPSSLPDLSGSIDDLPMGTEAPLNSAI
SVSGPSNSQGDQGNQTQSPFSPHTSPRVSSIRPGPSPPPVASPSPAGSNQISPTNGPGSQ
LAPQTPGNLSDTGSNSSMNQIPMAQDRAFMRRSQNQYGPQQSGPPMSPHLSTRNQMQHGM
SVYQQNSTSSYGPPSGPYGPQGNYSRHPYGGMTNANCSGLGSGMSNSLGMNASSPMHGQG
PGQPMSMGRAPGPPGNRLYLSGGNSMAPTSPSMPQSAGPGMGPPTGNVNRKAIDGPMATV
HPTGNSAQGRQGGYCGMMGTGSSYSHQVGNATAMMSPQSCSSTTSPSGPMGEGGEVAMPA
DTKQKSSSKEEVIPVAEPHKPPKDGSSSQCGSEPPTPSALTPSPASLSSYHGDDSDSISS
PAWPKTPSSPKSGSGTTTNDKVSRLYEMGSEPERKSWVDRYLSFMEDRGTPVPHLPVVGK
KQLDLCKFYMAVKELGGLAMVNKNKKWRELSSTLGLGTSSNSASSLKKHYIQYLFAYECK
LERGEEPPPDSCPNADGKKQGKTEPPSPATSGSLQGPQTPQSTGSSSMPEMPGELKPPTP
ATTPQGHISIPGNSNNSVSIQDPFSDGSDPAFQKRNILSSGGSYQSAMNPMDSMMRMQYE
NKDHFAGMRKAVGGEPCMPAQMTPAGMQDIYGRSPSSGPMAGLGMGQRSQYPYGPGYDRR
SDHLMGMDGSMGPHGNQGSMSHANNDGSMYSPNRYHNQQRHDGYGQQYPGMPYGVHPPGM
YPQQGYKRPLDGMYSPPAKRHEGEVYGMQYGGPQTDMYGQYGGNYPERRPMQTPFPYPYS
RERLQNTSQGPQHHPVQHSMMGAGHSVPTGDGPTHMWPSRTDMSYSYSNRHGTPSQSSPY
PGMGRIDDMDGVRADNQWPGHQRQTPYISGHSNSMGLLNSRPPSSYQTSNHISCEPSPGS
FQRSMEAHMQPNKMAFMQSMKMHKPGMPVPSGSGSGVPGQMPPNMRRDYPMGCVEGTQPL
PKPRRKMTSKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLAQLPGF
LELIVEYLRRCLIEIFGILEEYEVGTLGQKTLLGPAEDEREQDLLKSDIPYEPESSQEPE
KNSMDSLPGSSETDTELIQEGQNKNEIFKNETEEKDEQRTEDINEPVESHSSTMPEPRPK
QASKYDKLPVKIVPKDDFIRDISDELGHVQKFDSGLLHWKAGGGDSTSYILTHFDSHEEC
ANNSVQSKQHCCALKSEEVHNNQVATIDDVLSPRLRALSEEENSSASLSNSSYSLRLFEN
QKGITLLEDEPHCPDEPPLCTKSSWQDSLTKRCICVSNIIRSLSFIPGNDTEMSKHAGLI
LILGRLLLLHHEHPERKRTVPSYDKDEYHKEEEIKPCSRDEWWWDCLAALRENTLVTLAN
IAGQLDLSVYPESICLPILDGLLHWMVCPSAEAQDPFPSAGPHSLLSPRRLVLECLCKLS
VQDGNVDLILATPPFSRQEKFFATLVRHVGERKLQVYREMAVAVLSNLARGDSSAARGIA
IQRNSVGNLVGFLEDGIAMTQYHQNPHSLLHMGHPPMEQPSVSMMCRAAKALLELAKVEE
NRPEFVLYESRLLDIAISSVLNVSVVAIICDVLFHLGKS
NT seq
6420 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaagtggcatcagtcccggcggcgtctaataacaacaagagcaagacttta
tctggggttttgggacaagatttaaactccgggaagcgtgcaggaggaatcggggacgtg
agaagcgcgagtaataacaataacaataacactaataatactactactactaataataat
gtagatcggcgttgtgatgacctgagccgaactggtggaagcgtgacaacttcagtgtcc
tcctcctcctcttcctcatcatcatcatcttcctcatcatcttcatcttcatcatcatca
atgtcgtcgagctctcctggtgcagaaacgggttttgtggttaatcataaactaaagcac
gctcccggagatattcggtttcagcagcacagcaatcagcgcgccgtacagaggaaccac
agcagccaggacgcctccgaccagcagaggttaggaggcagggagagtgctgtaggaggc
agttctgagcagcacatgctgagaaaaagtgctgaagatcagccttgcagagccgcagag
cccatgagtaggagcaggtacgagcaaggcaacttggcaccgagtctccaagcctcccat
gcccagggcgcaggaggaggaggtggaggaggtggagggaaaacaccagtctctgacttc
aatcactattttggaagttcaagatcaggaccttgcttcgatcagcacggggcacagcag
ggctttggcactctgatgtatcccgccacttctaatcatgtggaagcctctccaaactcc
cacgaagggcagcagaagagtcagtacggcgcttatgcgggctacggggctgcgggatac
agtaacccggcctccagtcaggccaaatgcgccccggttgggtccatgaacaacgccggg
gggtttgtacgtttcccgggacagagtcagcatccttccggcgcgactcccaccctgaac
cagctgctcacttctccaggacccatgatgcgatactatgaatacagcagcggaaaagat
gcgagctctcagtacgggtgtggaggctcagggtggccgggacagagagctaatcccggg
gctgcaaacagcgctcaaagcgccacccggaaccaggtgggttctatggacttcatggtg
atgaagcgctctcagatgtacgggatgagcagcggtccgtactctcagcagcagcagggt
gtcccctatcccagtcagccgtacggatctccttctacacacagatacccgatggccatg
cagggcagaggacaaatgagcatgggtgcgatgccatatcctcaacaacaggtacctgct
cactttggccagcagggcatgggagggtactgtcctcagggccagcctgggtactacagc
cagtctcagcaatcccagcagcctcagcagcaggcaccctacagccagcctcgtactacc
acacagcaggagactcaggagagctacggaaacagaagccagccttctgggaatgctggg
aaacccaaccatgatgagatgggattgatccagcaggaccgtccctccagcctgccggac
ctgtcaggctccatcgatgacttgcccatgggaactgaggctcctctcaattcagccatc
agtgtctctggtccctccaacagtcagggagaccagggtaaccagactcagtctccgttt
tcaccacacacctctcctcgtgtctccagcatacgccctggaccctcgcctccacccgta
gcctcccccagccccgccggctccaaccagatctcccctaccaacggcccagggtcccag
ctggcaccacagacccctgggaacttatctgacactggctccaactccagcatgaaccag
attcccatggctcaggacagagcctttatgaggaggagtcaaaaccagtatggtcctcag
cagtcaggaccacccatgtccccacatctgtccaccaggaaccagatgcagcatgggatg
agcgtctatcagcagaactccacgagttcctacggtcctccgagtggtccctacggccca
caaggtaactactcgagacatccctatggaggaatgaccaacgctaactgcagtgggctg
gggtctggcatgagcaacagcctgggcatgaacgccagcagccccatgcatggacaagga
ccagggcaacccatgtccatgggccgtgcccctggaccccctggcaatcgactctacctg
agtggtgggaacagcatggcacccacttctcccagcatgccacagtcggctggtccaggg
atggggcctcctacaggaaatgtgaatcgtaaagctatagatggtccaatggccacagtg
catccaacaggcaactctgcacaggggaggcagggtggttattgtggaatgatgggcacc
ggctcgtcgtatagccaccaagtgggaaatgccacagcgatgatgtcaccacagagctgc
agctccaccacgtctccttcaggccccatgggtgagggtggagaggtggcgatgcctgca
gacaccaagcagaaatccagcagtaaagaggaagtgattcctgttgctgagcctcacaaa
cccccaaaggatggctccagctctcagtgcggctcggaaccccccacaccctcagccctt
acccccagccccgctagtctgtcctcctaccacggggatgacagtgacagcatcagcagt
cctgcatggcccaaaactccctccagtccaaagtcaggctctggcaccacaacgaatgac
aaggtttctcggctgtacgaaatgggaagtgagccagagagaaagagctgggtggatcgc
tatctgtccttcatggaggacagagggacaccagttcctcatctccctgtcgtgggcaaa
aaacagctggatctgtgcaagttctacatggctgtaaaggagctaggtggcttggccatg
gtgaataagaataagaaatggcgcgagctctcctccacgctcggtttaggcacgtccagt
aactctgctagctctctgaagaaacactacatccagtatctgtttgcctatgagtgtaag
ttggagagaggagaggagcctccgcctgactcctgccctaatgctgacggcaagaaacaa
ggcaagaccgagccgccgtctcctgccacctcaggctctctacagggccctcaaacccct
cagtcgacgggcagcagctccatgcctgagatgcccggtgagctaaaaccgcccacgcca
gccaccacgccgcaggggcacatcagtatcccaggcaacagcaataattcagtcagtatt
caagacccgttctcagacggcagtgatcccgcgttccaaaaaaggaatatactgagctct
ggaggctcttatcaatcagccatgaaccccatggactccatgatgaggatgcagtatgaa
aataaggaccattttgcaggaatgaggaaagcggtaggtggagaaccatgcatgccggct
cagatgacccctgctggcatgcaggacatctatggaaggagtccctcgagtggccccatg
gcaggacttggtatgggtcagcgttctcagtacccttatggaccaggatatgaccgcaga
tcagaccatttaatggggatggatgggagtatgggtccccatggaaatcaaggcagcatg
agtcatgccaacaatgacggtagcatgtactctcctaacagataccataatcaacaaaga
catgatggctatggacagcagtatcctggtatgccatatggcgtccaccctccagggatg
taccctcaacagggctacaagcgacccctagatggaatgtacagcccccctgctaagagg
catgaaggagaggtttatgggatgcagtacggaggcccacagacagacatgtatggtcag
tacggaggaaattatccagagcgccgacccatgcagactccctttccttatccatatagc
cgggaacggctacagaacaccagccaggggcctcagcatcatcctgttcaacacagcatg
atgggtgctggacattcagtgcccacaggagatggcccaacacacatgtggccctcaagg
acagacatgtcctattcttactctaacagacacgggacacctagtcagagctctccatac
ccagggatgggacgcatagatgacatggatggagtcagagcagacaatcagtggcccggg
catcagcgccaaacaccatacatatctggtcactctaactccatgggtcttctgaattca
cggcctccatcttcctaccagacctctaaccacatctcctgtgaaccaagcccagggtct
tttcagcgctctatggaagcacacatgcaacccaacaagatggcctttatgcagtctatg
aagatgcacaagcccggaatgccagtgccaagtggctcggggagtggagtcccaggtcag
atgccacccaacatgaggagagactatccaatggggtgtgtggaagggacccaacctctc
ccgaaacctcgacgcaaaatgacctcaaaagacactggaaccccagaagcctggcgagtg
atgatgtcactcaagtcaggtcttctggcagaaagcacatgggctctggatacaatcaac
atcctcctttatgatgacagcactgtagcatcattcaacctggctcagttgcctggattc
ctagagctcatcgtagagtatttaagaagatgcttgattgagatctttggcatcttggag
gaatatgaggtggggactctcggccagaagactctgcttggtccagctgaggatgaaaga
gagcaggacttgctcaaatcagacatcccttatgagccagagtccagccaagaaccagag
aaaaactccatggactctctacctgggtcttctgagacagacacagagttaattcaggaa
ggtcagaacaagaatgagatattcaaaaatgagacagaggagaaagatgaacagagaact
gaggatattaatgagcctgttgagagccattcgtcaacaatgcccgaaccaagacccaaa
caggccagcaagtatgataagctgcctgtcaagattgttcccaaagatgactttatcagg
gatatttctgatgagcttggccatgtgcagaagtttgacagtggactgcttcactggaaa
gcaggtggtggggactccacaagctacatcttaacacattttgacagccatgaggagtgt
gctaataatagtgtccagagcaaacaacactgctgtgctttaaaatcagaggaggtacat
aacaaccaagttgcaactatagatgatgtgctgtccccaagattgagagctctctctgag
gaagaaaactcatcagcctccttgagcaattcctcatactcattacgcctttttgagaac
cagaaagggatcactctactggaggatgaacctcactgtccagatgaacctccactgtgc
acaaaatccagctggcaggactctttgaccaaacgctgcatatgtgtctccaatatcatt
cgcagcctgtcgttcatccctggaaatgatactgagatgtccaagcatgcaggcctgatt
ctgatccttggccgattgctgctgttgcaccatgagcacccagagaggaagagaaccgtc
cctagctacgacaaagatgagtaccataaggaggaagaaatcaagccctgcagcagggat
gagtggtggtgggactgtctggcagcactgagggagaacactttggtcacattagccaac
attgcggggcagctagacctgtcagtctacccagagagtatctgccttcccatccttgat
ggcctgctccactggatggtgtgtccttcggctgaggcccaggacccgtttccttcagca
gggccacattcactgctcagcccaagaagattagtgctggaatgtctgtgcaagctcagc
gttcaagacggcaacgtagacttgatcctggccacacctccctttagtcgtcaggagaag
ttctttgccacactggtgcgtcatgtgggagagcgaaaactgcaagtttaccgcgagatg
gcagtggccgtgctgtccaacctggctagaggggattcttcagcggcacgtggcatcgcc
attcagagaaacagtgttggcaacctcgtaggcttcctagaggatggaattgccatgact
cagtatcaccaaaacccacacagtctgctgcacatgggtcatcctcccatggagcaaccc
agtgtgagcatgatgtgtcgagctgcgaaggcgctgctggaactggccaaagtggaggag
aacaggcctgagtttgtgctgtatgaaagcagactactggatattgccatctcctccgtg
cttaatgtaagtgtggtggccatcatctgtgacgtactctttcacctcggcaagtcatga
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integrated database retrieval system
