Pangasianodon hypophthalmus (striped catfish): 113545263
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Entry
113545263 CDS
T05759
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113545263 (prpf39)
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
113545263 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
ARM_TT21_N
TPR_15
Apis_Csd
Iml2-TPR_39
TPR_MalT
TPR_12
Motif
Other DBs
NCBI-GeneID:
113545263
NCBI-ProteinID:
XP_026800320
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MEQSDPQLSDEAMTGMVGADASDNGNATAMEGAGDSFVPDLPNMAPDAQWTMDQVPDTFA
GLANQQNPEQGQVEQYEQYLVDGQSQSSMGQKSDLSEQHDNSTYVDGNQPETNGQAAEGH
LKESELSSEKQAETGSSDSPANMELEDGSKEGSEVDASLSKPSLPTDFDRLYKVVEDDPE
DFNGWVYLLQYVEQENHLLASRKAFDAFFLRYPYCYGYWKKYADIEKKHGCIQEADEVYR
RGLQAIPLSVDLWLHYITFLKENQDTSDGEAENRIRAAYEHAVLAAGTDFRSDRLWEAYI
SWETEQDKLANVTAIYDRVLGIPTQLYSQHFQRFKDHVQNNNPKHFLSEEEFVQLRLELA
AANKPSGEGEEETPSEELPPGTEDLPDPAKRVTEIENMRHKVIETRQEIFNHNEHEVSKR
WAFEEGIKRPYFHVKALEKTQLTNWREYLDFELENGTPERVVVLFERCLIACALYEEFWI
KYAKYLESYSTEGVRHIFKKACTVHLPKKPTIHVLWAAFEEQQGNIDEARGILKSLEEAV
PGLAMVRLRRVSLERRHGNLDEAVALLEDAIKNAKNTSESTFFSVKLARQFFKVQRSVGK
AKKVLLEAIEKDETSPKLYLNLLELEYSGDVQQNEAEILACFDRALSSTMPLEARVTFSQ
RKVEFLEDFGSDINVLVASYEQHQKLMKEQESTKRKAENGSQEPDSKRQRMDDGSVASGQ
MMPDMQANHGGYNYNNWYQQYNSWGSQNTWGQYGQYGQYNQYYPPPPT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatctgatccacagctctcggacgaggccatgacggggatggttggtgcagat
gcctccgacaatgggaatgctactgctatggaaggtgcaggagacagcttcgttcctgac
cttcctaacatggctcctgatgctcagtggacaatggaccaagtacctgacacttttgct
ggtcttgcaaatcagcagaacccagaacaaggccaggtggagcagtacgaacagtacttg
gtagatgggcagtcacagtcttcaatggggcaaaaatctgacctttctgaacagcacgat
aattcaacatatgttgatggaaatcagccggaaacaaacggacaggctgcagagggtcat
ctcaaagagtctgagttgagctcagaaaagcaggctgaaacaggcagttcggacagccca
gcgaatatggagcttgaggatgggtccaaagagggaagtgaagtagatgcctcactgtca
aaaccttcgctccccactgatttcgacaggctctataaggtagttgaggatgatcctgag
gactttaatggctgggtctaccttctgcaatatgttgaacaagagaatcacctgttggct
tcgagaaaggcatttgatgccttttttctacgctatccctattgttacggctattggaag
aaatatgcagacatagaaaaaaagcatggctgcatacaggaggcggatgaggtgtatcga
agaggtctgcaggccatcccactcagcgttgacctttggcttcattatataactttctta
aaggagaatcaagacactagtgatggagaagctgagaatcgcatacgagctgcctatgag
catgcagttcttgctgcgggtacagacttccggtcagaccgtctgtgggaagcttatatt
agctgggagactgagcaggacaagttggccaatgttacagcaatttatgaccgtgtcttg
ggtattcctactcagctgtattcccagcacttccagaggttcaaggatcatgtgcaaaac
aataatcccaagcacttcctgtctgaagaggagtttgttcagctaaggttggaacttgca
gctgccaataagcccagtggagagggagaggaggaaacccccagtgaggagctaccacca
ggcacagaagaccttcctgacccagcaaagagagtcacagagatcgagaacatgcgacat
aaggtgatcgagacgcgtcaagagatatttaaccacaatgaacatgaagtcagcaagcgc
tgggcctttgaagaagggatcaagcgtccatatttccatgtgaaagccttggagaagact
cagcttaccaactggagggagtacctggactttgagctggagaacgggacaccggagcgt
gtagtggttctgtttgagcgctgcctgatcgcctgtgccctgtacgaggagttttggata
aagtatgccaagtacctggagagctacagcacagagggagtgaggcacatcttcaagaaa
gcatgcaccgtccacctgccaaaaaagcctaccatccatgttctctgggcagcttttgag
gaacaacaagggaacattgatgaggctcgaggcatcctgaaaagtctagaggaggcagtt
cctggtttggccatggtgagactacgtcgtgtgagccttgaacgtcgccacgggaacttg
gatgaagcagtagctcttctggaggacgccatcaagaatgcaaaaaacacaagtgaatcg
accttcttctccgtgaagctggctaggcaattcttcaaagtacagaggagtgttggaaag
gctaaaaaagtattgctagaggccattgaaaaggatgagaccagtcccaagctctacctg
aacctgctggaactggagtacagtggagacgtgcagcagaacgaggcagagatcttggca
tgcttcgaccgggcgctcagcagcaccatgccgttagaggcgcgtgtaactttctcacag
cgaaaagtagagtttctggaggactttggaagcgatataaatgtgcttgtagcttcttat
gaacagcatcaaaaacttatgaaagagcaggagtccacgaagaggaaagcagaaaatggg
tcacaagagccagattcaaagagacagcgcatggacgatggctcagtggcatctggccag
atgatgccagacatgcaagccaatcacggaggatacaactataataactggtatcagcaa
tacaactcctggggaagtcagaacacctggggccagtacggccagtatggccagtataac
cagtactaccccccacccccgacatga
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