Pangasianodon hypophthalmus (striped catfish): 113545291
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Entry
113545291 CDS
T05759
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
113545291 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113545291 (chd8)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113545291 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
DEAD
Chromo_MIT1
MUN
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
113545291
NCBI-ProteinID:
XP_026800369
LinkDB
All DBs
Position
Unknown
AA seq
1957 aa
AA seq
DB search
MHSTSTITLVGGKKRKRNASSDHSDGELNTPLTQEENLSQMRRSNRQVKRKKYTEDLDIK
ITDDEDEPGEDVDVTTPAAILSTAHSQSMGTSFQELEGDGLPSMQFFVENPSEEDAAIVD
KVLSMRLTKKEVSPGQYANVEEFFVKYKNYSYLHCEWASLEQLERDKRIHQKLKRFKAKQ
SQMRTFFQEDEEPFNSDYVEVDRILDESHSVDKENGEPVVYYLVKWCSLPYEDATWELKE
DVDEGKVEEFKRIQSRQPRIKRPPRPPASAWKKLEQSREYRSGNTLREYQLEGVNWLLFN
WYNRQNCILADEMGLGKTIQSIALLSEVFATGVQGPFLIIAPLSTITNWEREFSTWTEMN
AIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREIYWRCV
IIDEAHRLKNRNCKLLDSLKMLNLEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSETEF
LREFGNLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAIL
ERNFSFLSMGANQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVAELREVYNASAPDFH
LQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR
GNLRQAAIDRFSKSDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCH
RIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSSNKDNNVNGVHQFTKKEI
EDLLRKGAYAAIMDENDEGNRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENR
TDIALDDPEFWQKWAQKADIDLDTINRKNTLVIDTPRVRKQTRQYSSLRGESGDLSDLDS
DEEYPPQNSRQARASRRADRHSGGGYGRTDCFRVEKHLLIYGWGRWHDILSHARCKRRLG
EKDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGQEPNTLLNHSGLSIPVPRGRK
GKRVKAQSSFDVQKAEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGE
HVNSILEGADSRDIDIWLPEMEQQDVPSGWWDAEADRCLLIGVFKHGYEMYTTMRADPCL
CFLERCGRPDDQDIKAEQHSADPDLRDGGAYDKFSEDPEFKPVIRHSKEMYEETDPRNMD
EFFVEDHSTYSTAVPIEAQSSGSMGNCYWPTSSSLTARLRRLITAYQRSYRREQLKIEAA
EKGDRRRRRCEQATKLKELARQERQQRWTRREECDFYRVVSTFGVERIKTEVGTQEGREA
RLDWTRFRTFARLDKKTDESLTRYFHRFMAMCRRVCHLQPARGEESPDLSHSLAPITEER
ASRTLYRISLLTRLRELVLPHLSLEERLALAPPSSDLPNWWRTPQHDHELLLGAASCGVS
RTEHYIFSDSQFSFIQAHHEYVQKQQACLAAQTLTHSPPQQGDNVREVKIGDKNQVLASI
CSSALPAIPFSHSEGKRREQVGWSWNKISGGGPRGGERKQGETDGGPSDSDSDSDSESST
SSHRSPSSDVSGDSDAERDEQEPLKICDADEENSTLSFTPSQDGAPPETLTDPLRVDWPK
DRVLINRIDNLCTLVLTGHWPSGRRYTSDPQLTLGYDEQGLGDDLGYTRISRKGNSTLSG
EDGEETEFTVKLLKEEGLKLTFSKQALIPNGSARETSGRRRRRDQESSDTEGVLCAPRKR
DLPNWLKENPEYEVEGDMLELLVNRTKRKRRKKRAEKEQAPTGSERVKIIDMKTGKKVQY
GGVYGPALQDLKEYLEENPDHAVAPEWADTVRNSGFLPEHFFHRLLTLHTSISRQSHNYL
TNPSAQTGPHLEAGENETLVSDGAYIMDDEDLDSSALTTSHHFLTSTYDAKMEAGSLDMD
KGDALSPIGYDSSDREAILDDVIMAPKNSDFSSCSED
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccagcaccatcactctagtaggtggtaaaaaaaggaaaagaaatgcatct
tcagatcattcagatggagaactgaacactcctctcacacaggaagaaaatctgtctcag
atgagacgttctaatcgtcaggtgaaaaggaaaaagtacacagaggatttagatattaaa
atcacagatgatgaagatgagccaggtgaagatgtggatgtgaccaccccagcagccata
ctgtctacagcacattctcagtctatggggacttcattccaagagctagaaggggatggc
cttcccagcatgcagttcttcgtggaaaacccaagtgaagaagatgcagcgattgtagat
aaagttttgtctatgcgccttaccaaaaaggaggtatctccaggccagtatgccaatgtg
gaggaattctttgtcaaatacaaaaactactcatacttgcactgtgaatgggccagtctg
gaacaacttgagagggacaagaggatccaccagaagctgaagagatttaaggctaaacag
tctcaaatgagaaccttcttccaagaggatgaggagcctttcaattcggattatgtagag
gtggaccgcatcctggatgaatcccatagtgtggacaaagaaaatggagagccggtggtg
tactacttagtgaagtggtgctctttgccctatgaggatgccacgtgggagctgaaagaa
gatgtagatgaagggaaggtggaggagtttaaaaggatccagagtcgccaacccagaatc
aagagacctcctcgcccacccgcaagtgcatggaagaaactggagcaatcacgagaatac
cgtagtggaaacactctgagagaatatcagctagagggcgtcaactggctacttttcaac
tggtataacaggcagaattgcattctggcggatgagatgggtcttggcaagaccatccaa
tcaatagccctactgtctgaagtatttgctactggagtccagggaccctttctgataatt
gcccctctctccaccatcacgaattgggaaagagaattttccacatggacagaaatgaac
gccattgtctatcatggcagcctggccagcagacagatgatccagcagtatgagatgtac
tgcaaagatgataaggggcacctcattccaggagcttataaatttgatgctctgatcacc
acctttgagatgattctgtcggactgcccagaactaagggagatctattggcgttgtgtg
atcattgatgaagcacatcgcctgaagaacagaaactgcaaactgcttgacagtctcaag
atgctgaatttggagcataaagtgctgttaacaggcacgcctttgcagaatactgtggaa
gagttgttcagtctattgcacttcttagaacctgcacagttcccttcggagacagagttc
ctgcgtgaatttggcaatctcaaaacagaggagcaggtgcagaagttgcaggctattctg
aaacccatgatgctacgcagactgaaggaggatgtggaaaagaacttggcgccaaagcag
gagaccattattgaggtggagttgactgatgtgcagaagaagtactaccgtgctattcta
gagcgtaacttcagcttcttgagcatgggagctaatcagaacagcaacgtccccaatctt
cttaacaccatgatggagctccgcaaatgctgcaaccacccttatttaatcacaggtgct
gaagagaagatagtggctgaacttagggaggtgtacaatgcctcagctccagacttccac
cttcaggccttggtgcgctcagcagggaaactggtccttctagataagttgctgcctcgt
ctcaaggctggtggacacaaagtgcttatcttttcccagatggtgcgctgtctcgacatt
ctagaagattatctcatccacaagagatatctctatgaacgcattgatggtcgagtaaga
ggaaaccttcgtcaggcagccatcgatcgcttcagtaagtccgactctgaccggtttgtc
tttttgctgtgtacccgggctggaggactgggcattaatctgactgctgccgacacttgt
gttatattcgactctgactggaacccacagaatgaccttcaggcccaggcacgttgccat
cgtattggccagtccaaggcagtaaaggtctatcgtctcatcaccagaaactcctatgaa
cgggagatgttggacaaagctagtttgaagttgggactggatagggctgtgcttcaaagc
atgagcagcaataaagataataatgtcaatggggttcaccagttcaccaagaaggagatt
gaagatttgctacgaaaaggagcttatgctgctattatggatgagaatgatgagggcaac
cgtttctgtgaagaagacattgaccagatccttcagaggagagccaccactatcaccatt
gagagtgagggcaagggatccaccttttctaaggccagctttgtggcatctgaaaatagg
actgacattgctctggacgacccagaattttggcagaagtgggcccagaaagcggacatt
gacttggacaccataaacaggaagaatactcttgtgattgatactccacgtgtacgaaag
cagacacgacagtactcgtctcttcgtggggaaagtggtgatctttcagacttagacagt
gatgaggagtatccaccccaaaactctcggcaggcccgagcctcacgccgcgctgaccgt
cactctggtggtggctatggccgcactgactgtttcagagtggagaaacacctgctaatt
tatggctggggacgttggcacgatatcctgtcccatgctaggtgtaagcgtcgtcttggg
gaaaaggacgtggagaccatctgcagggtcatcctagtcttctgtctgctacattaccgt
ggagatgaaaacatcaaaagcttcatatgggagctcatcactcctccagagaatggccag
gaaccaaacacactcctcaaccactctggtctgtccatccctgtgcctcgtggacgaaaa
gggaaaagagtcaaggctcagagctcttttgatgtgcaaaaggcagagtggatccgcaag
tataacccagatacacttttgttggatgacagctatcgcaagcacctcaaacaccagtgt
aacaaggtgttgctgcgagtacgtatgctgtactacttgaaacaggaagttattggagaa
cacgtgaattctatacttgaaggcgctgacagcagggatattgacatttggctgcctgag
atggaacagcaggatgttccatcaggctggtgggatgcagaggctgatcgttgtttgctt
atcggagtgttcaaacatggatacgagatgtatactacaatgcgtgccgatccctgtttg
tgtttcctggagagatgtggccgccccgatgaccaggacataaaggctgaacagcactca
gcagatccagatttgagagatggaggtgcctatgacaagttttcagaggatccagagttc
aagcctgtaataagacacagcaaagaaatgtatgaagagactgaccccaggaacatggat
gagttctttgtggaggatcactccacatattccactgctgtgccaattgaggcacaatcc
tcaggatctatggggaactgctactggcctacaagctcctccctcacagctcgactacgg
cggctaatcacagcgtaccagcgcagctacagacgagaacaactcaagatcgaggcagca
gaaaaaggagatcgacgacgccggcgctgtgaacaggccaccaaactcaaagagcttgca
cgacaagagcgacagcaaaggtggactcgtagagaagagtgcgacttttatcgggtggtg
tccacatttggtgtggaacgcataaagactgaggtgggaacccaagagggtagagaggcc
agactggactggacacgtttccgcacatttgcaagactagacaagaaaactgatgagagt
cttacccgatacttccatcgctttatggctatgtgtcgcagggtctgtcacttgcagcct
gcccgtggagaggaatctccagatttgtcccactctctagcacccatcaccgaggagcga
gcctcacgaacactgtaccgaataagcctgttgacccgcctacgtgagctcgtccttcct
catctctccctagaggagcgccttgccctggcaccacccagctctgacctgcccaactgg
tggcgtaccccacagcatgatcatgaactgctcctaggtgctgccagctgtggcgtaagc
cgcacagagcattacatattctcagactctcagttctcgtttatccaagcccatcatgag
tatgtgcaaaagcagcaagcatgccttgctgcacaaaccctcacacacagcccaccacag
cagggagacaatgttagagaagtaaaaattggtgataaaaaccaagttttggcatcgatt
tgctcatcagcccttccagccataccattctctcactctgaaggcaaaaggagagaacaa
gtaggctggtcctggaataaaatcagcggcgggggacccagagggggtgaaaggaaacaa
ggggagacagatggagggccttcagactctgattctgattctgattctgaatcatctacc
tcttcccatcgctctcctagttcagatgtcagtggggacagtgatgcagagcgagatgag
caggaaccactgaagatctgtgatgcagatgaagagaatagcaccctttcattcactccg
tcccaagatggcgctccaccagaaacgctcactgacccactcagagttgactggcctaag
gatcgtgtattaataaaccgaatagataacctttgtactctggttctgacgggacactgg
ccatctgggcgacgatatacctcagatcctcagcttactctgggttacgatgagcagggg
cttggagatgacctaggctacacgcgtatatcccgcaaaggcaacagtactctctctgga
gaggatggagaagaaacagagtttactgtcaaactcttgaaagaggaagggctgaaattg
accttctccaaacaggctctaatacctaatgggtcagcaagagagacaagtggacggcga
aggcgcagagatcaagagtcatcagatacagagggagtactctgtgcccctcgtaaaagg
gacctgcccaactggctcaaagaaaatcctgaatatgaagttgagggtgacatgctagag
ctgctggtgaacaggaccaaaaggaaaaggagaaagaagagagcagaaaaggaacaagcc
ccaactggcagtgaaagagttaagattatagacatgaagactggcaagaaggttcagtat
ggtggggtgtatggacctgcattgcaggacctaaaggagtatcttgaagagaatcctgac
catgcagtagcaccagaatgggcagacaccgttcgcaactcgggcttcctgccagaacat
ttcttccaccgactgctgactctgcacacctcgatctccagacagagccacaattacctc
accaacccttcagcccaaactggccctcatctggaggcaggtgaaaatgagacactggtt
tctgatggggcttacatcatggacgatgaagatctggacagtagtgctcttactacttct
caccacttcctgacttctacatatgatgctaagatggaggctggttctcttgacatggac
aaaggagatgctttgtcaccgattggatatgatagctctgatagggaagctatattggat
gatgtgattatggcacctaaaaattcagatttttcctcatgctcagaagattga
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integrated database retrieval system
