Pangasianodon hypophthalmus (striped catfish): 113545455
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Entry
113545455 CDS
T05759
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
phyp04040
]
113545455 (trpc1)
Ion channels [BR:
phyp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
113545455 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
Ank_3
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
113545455
NCBI-ProteinID:
XP_026800626
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MRLGLGVLSYPLPVLMAALYRGPHTASPRAHLALKDVREVQEETTLDEKLFLLACEKGDY
YMVKKLLEEKRHGELNINCVDVLGRDAITIAIENENLDILQLLLDHGCQTTDALLVAIDS
EVVGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLK
QDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFEL
SADLKELSLVEVEFRTDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGL
LEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKLLTVLSVALL
WPLLSVCYLLGPRSRVGHIIHTPFVKFIIHSASYLTFLLLLNLYSLVYNEDKKNTMGPAL
ELIDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNHLSFVMNSLYLATFALKIVAHSKF
KNGHTDRKDWDASHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGK
FLGLFLLVLFSFTIGLTQLYGKDQKDPSKSKDDNKDCEGIFCEQQSNDAFHTFMGTCYAL
FWYIFSLAHVALFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKSFRQIAN
HEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSLSKWICSHTSTGKMKRQ
NSLKEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNE
MRDLLGFRTSKYAMFYPRS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggcctcggcgtgctgtcgtatccgctccccgtgctgatggctgcgctgtac
cggggcccgcacaccgcctctccacgcgcccacctggcgctcaaggacgtccgggaggtt
caggaggagaccacgctggacgagaagctcttcttgttagcctgcgagaagggtgattac
tacatggtgaagaagctgctggaggaaaaacgccatggcgagctgaacatcaactgcgtg
gacgtgttggggagggacgccatcaccatcgccatcgagaacgagaacctggacatcctg
cagctgctcctggaccacggctgccagacgacagatgctcttttggtggccatcgactca
gaggtggtgggagctgttgatattcttctcaaccatcggcccagacgatcctccaaaccc
tcgattgcaaaactgatgcagcggatccagaacccggaatattccaccaccatggacgtg
gcccccgtcatcctggctgctcacaggaacaactacgagatcctgaccatgcttctgaag
caggatatctcactgcccagacctcacgctgtgggctgcgagtgtactctctgcaacgcc
aagaacaagaaagacagcctgcgtcactccaggtttcggctggacatctatcgctgcctg
gcgagtccatcactcatcatgctgacggaggaggaccctattctcagagcgttcgagctc
agcgctgacctgaaggagctcagtctggtcgaggtggagttcaggactgattatgaagaa
ctagccaagcagtgcaagatgtttgccaaagacctgttagcccaagcgcgaaactcacgc
gagcttgaagtcatcctgaaccacacgagcagcgaggatcacgtggataagagaggacta
ctggaggagcggatgaacctcagtcgactcaaactcgccattaaatacaaccagaaagag
ttcgtggcgcagtctaactgtcagcagttcctgaacacggtgtggtttggtgagatggcg
agttaccggcgtaagcacacggggctgaagctgctgacggtgctgagcgtggctctgctg
tggcccctgctctccgtgtgctacctgctcggaccgcgctcacgcgtcggccacatcatc
cacacacccttcgttaagttcatcatccacagcgcctcttacctcaccttcctcctcctg
ctcaacctctactcgctggtctacaacgaggacaagaagaacaccatgggcccggcgctg
gagttgatcgactacctgctcatcctctggatcataggaatggtatggtcagatgtgaag
cgtctgtggtacgagggcctggaggacttcctggaggagtcgaggaaccatctgagtttt
gttatgaactctctgtacctggccaccttcgcgcttaaaatagtggctcatagcaagttt
aagaacgggcataccgaccggaaagactgggacgcctctcaccccatcctggtggcggag
ggacttttcgccttcgctaacgtgctcagctacctgcgtctcttcttcatgtacaccacc
agctccatcctcggccctctacagatctccatgggtcagatgctgcaggagtttggaaag
ttccttggcctgttcttgctggtgctcttctccttcaccattggcctgacgcagctttac
ggaaaagaccagaaggatccatccaagagcaaagacgacaacaaggactgcgaaggaatc
ttctgtgaacagcagagcaacgacgccttccacacgtttatgggaacatgttatgcgctc
ttctggtacatcttctctctggcccacgtggcgctgttcgtgaccaggatcagctacaca
gaggaactgcgctcgttcgtgggagccctcatcgttggcacgtacaacattgtcgtcgtg
atcgttctcaccaaacttctagtggccatgctgcataagagtttcagacagatcgctaac
catgaggacaaagagtggaaatttgcccgggccaagctctggctcagctactttgatgat
aaatgcacattgcctccgccgtttaacatccttccatccccaaagacgctgtgctactta
gtgaccagcctgagcaagtggatctgttctcacacgtccactggaaagatgaagagacag
aacagcctcaaggagtggaggaacctgaagcagaaaagggacgagaactaccagaagatt
atgtgctgcctggtgcatcgttacctgacatccacgcggcagaagatgcagagcacagac
caggccacggtggaaaacctcaacgacctgcggcaggacctgtccaagttccgcaatgag
atgagagaccttctcggctttcgcacatccaaatacgccatgttctaccccagaagctaa
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